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Bug 596730 - sci-libs/gsl-2.1 : OSError: [Errno 9] Bad file descriptor
Summary: sci-libs/gsl-2.1 : OSError: [Errno 9] Bad file descriptor
Status: RESOLVED WORKSFORME
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-10-10 07:46 UTC by Toralf Förster
Modified: 2016-10-15 13:06 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-history.txt (emerge-history.txt,36.83 KB, text/plain)
2016-10-10 07:46 UTC, Toralf Förster
Details
sci-libs:gsl-2.1:20161009-230232.log (sci-libs:gsl-2.1:20161009-230232.log,2.50 KB, text/plain)
2016-10-10 07:46 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2016-10-10 07:46:41 UTC
  File "/usr/lib64/python3.4/subprocess.py", line 491, in _eintr_retry_call
    return func(*args)
OSError: [Errno 9] Bad file descriptor

During handling of the above exception, another exception occurred:



$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-desktop-unstable_20161008-211338) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------
  USE flags ...

  ... in make.conf:
USE="  pax_kernel xtpax -cdinstall -oci8 -bindist ssp -cgi clang corefonts csc custom-cflags dnssec dot drmkms -eglfs exif fpm gcj gd -git gtk2 gtk3 -havege -imap inifile isag ithreads jpeg -kvm logrotate mbox -mod mpeg mpeg2 mpi multitarget odbc openssl osc pyqt4 qml -qt4 qt5 sasl semantic-desktop ssl system-cairo -system-llvm system-sqlite timidity tools traceroute udisks -v4l vdpau video vlc xa xetex xinerama zip"

  ... in /etc/portage/package.use/*:
  mail-mta/ssmtp      ssl mta
  net-misc/wget       ssl
  app-crypt/pinentry  -qt4 -gtk
  app-editors/emacs   -dbus -svg -ssl -gtk -gtk3
  app-text/xmlto      -latex
  dev-libs/boehm-gc   threads
  dev-libs/libpcre    pcre16
  dev-lang/python     threads
  dev-qt/qtgui        egl eglfs
  net-nds/openldap    -sasl
  dev-util/cmake      -qt4 -qt5
  dev-vcs/git         -perl -gtk
  media-libs/mesa     -vaapi
  sys-apps/kmod       tools
  sys-libs/ncurses    -gpm
  x11-libs/gtk+       -cups
  net-misc/iputils -caps -filecaps

  entries in /etc/portage/package.unmask/*:
  ~sys-apps/sandbox-2.11
  sys-devel/gcc:6.2.0
  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-4.9.3
 [2] x86_64-pc-linux-gnu-6.2.0 *
llvm-config --version:
3.8.1

Available Python interpreters:
  [1]   python2.7
  [2]   python3.4 *
Available Ruby profiles:
  (none found)
  -----------------------------------------------------------------

Portage 2.2.28 (python 3.4.5-final-0, default/linux/amd64/13.0/desktop, gcc-6.2.0, glibc-2.22-r4, 4.7.6-hardened x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.7.6-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.2
KiB Mem:    65285480 total,   3247180 free
KiB Swap:   67108860 total,  67095412 free
Timestamp of repository gentoo: Sun, 09 Oct 2016 21:10:40 +0000
sh bash 4.4
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.4::gentoo
dev-lang/perl:            5.24.0-r1::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo
dev-util/cmake:           3.6.2::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.22.2::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.13.4-r1::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 6.2.0-r1::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r4::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr clang cli consolekit corefonts cracklib crypt csc cups custom-cflags cxx dbus dnssec dot dri drmkms dts dvd dvdr emboss encode exif fam firefox flac fortran fpm gcj gd gdbm gif glamor gpm gtk gtk2 gtk3 iconv inifile ipv6 isag ithreads jpeg lcms ldap libnotify logrotate mad mbox mmx mmxext mng modules mp3 mp4 mpeg mpeg2 mpi multilib multitarget ncurses nls nptl odbc ogg opengl openmp openssl osc pam pango pax_kernel pcre pdf png policykit ppds pyqt4 qml qt3support qt5 readline sasl sdl seccomp semantic-desktop session spell sse sse2 ssl ssp startup-notification svg system-cairo system-sqlite tcpd tiff timidity tools traceroute truetype udev udisks unicode upower usb vdpau video vlc vorbis wxwidgets x264 xa xattr xcb xetex xinerama xml xtpax xv xvid zip zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="doi eu fr gug kok mn no rw sr-Latn" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-10-10 07:46:44 UTC
Created attachment 449714 [details]
emerge-history.txt
Comment 2 Toralf Förster gentoo-dev 2016-10-10 07:46:48 UTC
Created attachment 449716 [details]
sci-libs:gsl-2.1:20161009-230232.log
Comment 3 Toralf Förster gentoo-dev 2016-10-15 13:06:26 UTC
b/c it is build fine at few othher images I'll close this as long as I can't reliable reproduce this