Created attachment 397042 [details] emerge log Warning: Type mismatch in argument 'ww' at (1); passed REAL(4) to COMPLEX(4) /var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src/amore.f:18186.29: CALL YTOK(NH,NY,PZT,NK,RR(1),RR(1)) 1 Warning: Type mismatch in argument 'ww' at (1); passed REAL(4) to COMPLEX(4) /var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src/amore.f:18190.50: IF (.NOT.SKIP) CALL HOUT(T0,NH,NK,PZT,PH,ZS,RR(1)) 1 Warning: Type mismatch in argument 'ww' at (1); passed REAL(4) to COMPLEX(4) /var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src/amore.f:18200.51: IF (.NOT.SKIP) CALL ZIN(T0,PH,NK,MZ,PZ,HS,NH,RR(1)) 1 Warning: Type mismatch in argument 'ww' at (1); passed REAL(4) to COMPLEX(4) /var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src/amore.f:18204.28: CALL ZTOZ(PH,NK,MZ,NZ,RR(1),RR(1)) 1 Warning: Type mismatch in argument 'ww' at (1); passed REAL(4) to COMPLEX(4) /var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src/amore.f:18215.53: CALL PHKL1(T2,NRA,PH,NK,NZ,HST,II(1),II(1+NRA),RR(1),CC(1)) 1 Warning: Type mismatch in argument 'ww' at (1); passed REAL(4) to COMPLEX(4) /var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src/amore.f:15695.18: + RR(1),CC(1)) 1 Warning: Type mismatch in argument 'fo' at (1); passed REAL(4) to COMPLEX(4) /var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src/amore.f:15460.55: CALL TABNDO(T3,JTAB,ND,HMAX,KMAX,LMAX,II,RR(1),RR(1+2*ND)) 1 Warning: Type mismatch in argument 'cc' at (1); passed REAL(4) to COMPLEX(4) /var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src/amore.f:17182.42: call refft(mt,nra,neqP,nt,ii(1+nra),cc(ic3)) 1 Warning: Type mismatch in argument 'hklt' at (1); passed COMPLEX(4) to INTEGER(4) /var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src/amore.f:17216.47: call reffc(mt,nra,neqP,nt,ii(1+nra),cc(ic3)) 1 Warning: Type mismatch in argument 'hklt' at (1); passed COMPLEX(4) to INTEGER(4) /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/../../../../x86_64-pc-linux-gnu/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status Makefile:192: recipe for target 'amore' failed make[1]: *** [amore] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3/src' Makefile:131: recipe for target 'srcdir' failed make: *** [srcdir] Error 2 emake failed * ERROR: sci-chemistry/ccp4-apps-6.1.3-r11::gentoo failed (compile phase): * emake failed * * Call stack: * ebuild.sh, line 93: Called src_compile * environment, line 5910: Called die * The specific snippet of code: * emake -j1 || die "emake failed" * * If you need support, post the output of `emerge --info '=sci-chemistry/ccp4-apps-6.1.3-r11::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/ccp4-apps-6.1.3-r11::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:ccp4-apps-6.1.3-r11:20150220-012316.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3' * S: '/var/tmp/portage/sci-chemistry/ccp4-apps-6.1.3-r11/work/ccp4-6.1.3' This is a built bot chroot >> hardened << image located at a hardened stable host. Portage 2.2.14 (python 2.7.9-final-0, hardened/linux/amd64, gcc-4.8.3, glibc-2.19-r1, 3.18.5-hardened-r1 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.18.5-hardened-r1-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16166860 total, 3951568 free KiB Swap: 16777212 total, 16743680 free Timestamp of tree: Thu, 19 Feb 2015 21:15:01 +0000 ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.2_p53 dev-java/java-config: 2.2.0 dev-lang/perl: 5.20.1-r4 dev-lang/python: 2.7.9-r1, 3.3.5-r1 dev-util/cmake: 2.8.12.2-r1 dev-util/pkgconfig: 0.28-r1 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.10.3-r1, 1.13.4 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.8.3 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.2-r1 sys-devel/make: 4.0-r1 sys-kernel/linux-headers: 3.16 (virtual/os-headers) sys-libs/glibc: 2.19-r1 Repositories: gentoo ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --quiet --deep --jobs 1" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.de.gentoo.org/gentoo-portage" USE="X acl aes-ni alsa amd64 apache2 avx avx2 berkdb bzip2 cli corefonts cracklib crypt cups cxx dbus dnssec dri drmkms dvd ecc extraengine ffmpeg fontconfig fortran fpm gdbm gtk gudev gui hardened iconv isag jpeg justify libav libvirtd logrotate macvtap mbox minizip mmx modules multilib mysql ncurses nls nptl ogg opengl openmp pam pax_kernel pcre plasma png policykit qemu qt3support qt4 readline session spice sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssse3 tcpd theora thinkpad threads tk tls truetype uml unicode urandom usb usbredir uxa v4l v4l2 video vorbis xa xattr xmp xscreensaver xtpax xvfb xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_ SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
commit 7d62034735e700ca67e977470d79f5571b15b221 Author: Justin Lecher <jlec@gentoo.org> Date: Mon Oct 26 08:29:56 2015 +0100 Drop "CCP4: Software for Macromolecular Crystallography" obsoletes: Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=160190 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=324059 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=332485 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367771 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367773 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=383227 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=448756 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460502 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460504 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=466936 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467040 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467048 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=476580 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478580 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478586 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478588 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478594 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478604 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=521646 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=528512 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=530878 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=540760 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=555614 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556498 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=557038 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=561196 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=562780 Signed-off-by: Justin Lecher <jlec@gentoo.org> https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7d62034735e700ca67e977470d79f5571b15b221
