./setup build Building flower-0.7.2... Preprocessing executable 'flower' for flower-0.7.2... [1 of 5] Compiling Fork ( src/Fork.hs, dist/build/flower/flower-tmp/Fork.o ) [2 of 5] Compiling Options ( src/Options.hs, dist/build/flower/flower-tmp/Options.o ) [3 of 5] Compiling Metrics ( src/Metrics.hs, dist/build/flower/flower-tmp/Metrics.o ) [4 of 5] Compiling Print ( src/Print.hs, dist/build/flower/flower-tmp/Print.o ) [5 of 5] Compiling Main ( src/Flower.hs, dist/build/flower/flower-tmp/Main.o ) src/Flower.hs:241:9: Not in scope: ‘unsafeFreeze’ src/Flower.hs:242:9: Not in scope: ‘unsafeFreeze’ src/Flower.hs:243:9: Not in scope: ‘unsafeFreeze’ src/Flower.hs:244:9: Not in scope: ‘unsafeFreeze’ * ERROR: sci-biology/flower-0.7.2::gentoo failed (compile phase): * setup build failed * * Call stack: * ebuild.sh, line 93: Called src_compile * environment, line 2735: Called haskell-cabal_src_compile * environment, line 1851: Called cabal_src_compile * environment, line 689: Called cabal-build * environment, line 451: Called die * The specific snippet of code: * ./setup "$@" || die "setup build failed" * * If you need support, post the output of `emerge --info '=sci-biology/flower-0.7.2::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/flower-0.7.2::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:flower-0.7.2:20150119-102343.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/flower-0.7.2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/flower-0.7.2/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/flower-0.7.2/work/flower-0.7.2' * S: '/var/tmp/portage/sci-biology/flower-0.7.2/work/flower-0.7.2' * GNU info directory index is up-to-date. !!! existing preserved libs: >>> package: sys-cluster/openmpi-1.8.3 * - /usr/lib64/libopen-pal.so.6 * - /usr/lib64/libopen-pal.so.6.2.1 * - /usr/lib64/libmpi.so.1 * - /usr/lib64/libmpi.so.1.6.0 * used by /usr/bin/clustalw-mpi (sci-biology/clustalw-mpi-0.13-r1) * used by /usr/lib64/libparmetis.so.2.1.1 (sci-libs/parmetis-3.2.0) * - /usr/lib64/libopen-rte.so.7 * - /usr/lib64/libopen-rte.so.7.0.5 Use emerge @preserved-rebuild to rebuild packages using these libraries ! ! ! This is a build bot chroot located at a hardened amd64 host ! ! ! Portage 2.2.15 (python 2.7.9-final-0, default/linux/amd64/13.0, gcc-4.9.2, glibc-2.20-r1, 3.18.2-hardened-r1 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.18.2-hardened-r1-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16166860 total, 1171008 free KiB Swap: 16777212 total, 16754440 free Timestamp of tree: Mon, 19 Jan 2015 03:15:02 +0000 sh bash 4.3_p33 ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.3_p33 dev-java/java-config: 2.2.0 dev-lang/perl: 5.20.1-r4 dev-lang/python: 2.7.9-r1, 3.3.5-r1, 3.4.2 dev-util/cmake: 3.1.0 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.13.7 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.69 sys-devel/automake: 1.11.6-r1, 1.13.4, 1.15 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.8.4, 4.9.2 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.4 sys-devel/make: 4.1-r1 sys-kernel/linux-headers: 3.18 (virtual/os-headers) sys-libs/glibc: 2.20-r1 Repositories: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/tomoyo/conf /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --deep --jobs 1" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://gd.tuwien.ac.at/opsys/linux/gentoo/" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.de.gentoo.org/gentoo-portage" USE="acl amd64 berkdb bindist bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mbox mmx modules multilib ncurses nls nptl openmp pam pax_kernel pcre readline session sse sse2 ssl tcpd unicode zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON build log is stored in /var/log/portage/_emerge_20150119-112353.log
Pushed as: > 19 Jan 2015; Sergei Trofimovich <slyfox@gentoo.org> > +files/flower-0.7.2-ghc-7.8.patch, -flower-0.7-r1.ebuild, flower-0.7.2.ebuild: > Port to ghc-7.8 (bug #537052 by Toralf Förster). Thank you!
