Created attachment 368578 [details] build log dev-python/cython-0.20 doesn't install here because of F: mkdir S: deny P: /home/jarausch/.config/matplotlib A: /home/jarausch/.config/matplotlib R: /home/jarausch/.config/matplotlib C: /usr/bin/python2.7 /usr/lib/python-exec/python2.7/sphinx-build -b html -d build/doctrees -D latex_paper_size=a4 . build/html emerge --info dev-python/cython Portage 2.2.8_p14 (default/linux/amd64/13.0/desktop, gcc-4.8.2, glibc-2.18-r1, 3.13.0-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.13.0-gentoo-x86_64-AMD_Phenom-tm-_II_X4_940_Processor-with-gentoo-2.2 KiB Mem: 7907468 total, 2147944 free KiB Swap: 1048572 total, 1048572 free Timestamp of tree: Thu, 23 Jan 2014 15:15:01 +0000 ld GNU ld (GNU Binutils) 2.24 ccache version 3.1.9 [disabled] app-shells/bash: 4.2_p45-r1 dev-java/java-config: 2.2.0 dev-lang/python: 2.7.6, 3.3.3, 3.4_pre20140105::progress dev-util/ccache: 3.1.9-r3 dev-util/cmake: 2.8.12.1-r3 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.13.4, 1.14.1 sys-devel/binutils: 2.24-r2 sys-devel/gcc: 4.6.4, 4.7.3-r1, 4.8.2-r1, 4.9.0_pre9999::local sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2 sys-devel/make: 4.0-r1 sys-kernel/linux-headers: 3.13 (virtual/os-headers) sys-libs/glibc: 2.18-r1 Repositories: gentoo local sunrise ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-mtune=native -O2 -msse3 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/lib/neatx/home" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-mtune=native -O2 -msse3 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo " LANG="en_US.iso88591" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage /usr/local/portage/layman/sunrise" SYNC="rsync://rsync.informatik.RWTH-Aachen.de/gentoo-portage" USE="3dnow 3dnowext 3dnowprefetch X a52 aac acl acpi alsa amd64 avahi berkdb branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam ffmpeg fftw firefox flac fortran fuse gdbm gfortran gif gimp gnome gpm gtk gtk3 iconv ipv6 jpeg kde lapack lcms libnotify mad mmx mmxext mng modules mp3 mp4 mpeg multilib ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf png policykit ppds qt qt3support qt4 readline sdl session smp spell sqlite sqlite3 sse sse2 sse3 sse4a ssl startup-notification svg tcl tcpd threads tiff tk truetype udev udisks unicode upower usb vorbis wxwidgets x264 xcb xml xulrunner xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc multiboot" INPUT_DEVICES="keyboard mouse evdev wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en de" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="ati radeon fglrx" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON ================================================================= Package Settings ================================================================= dev-python/cython-0.19.2 was built with the following: USE="doc -test" PYTHON_TARGETS="python2_7 python3_3 -pypy2_0 -python2_6 -python3_2"
Works fine here. Any weird or interesting configuration we should know about?
(In reply to Mike Gilbert from comment #1) > Works fine here. Any weird or interesting configuration we should know about? A similar bug has been fixed by Justin Lecher for dev-python/sympy : https://bugs.gentoo.org/show_bug.cgi?id=488378 Justin Lecher <jlec@gentoo.org> changed: What |Removed |Added ---------------------------------------------------------------------------- Status|UNCONFIRMED |RESOLVED CC| |jlec@gentoo.org Resolution|--- |FIXED --- Comment #3 from Justin Lecher <jlec@gentoo.org> --- I have added a workaround. PLease test and report again. + 28 Dec 2013; Justin Lecher <jlec@gentoo.org> sympy-0.7.3.ebuild: + Add workaround for XDG_CONFIG_HOME problems, #488378 +
I have added a very similar patch as Justin did for sympy. Thanks Justin! See the attach patch. Helmut
Created attachment 368610 [details, diff] patch to cython-0.20.ebuild
Helmut: Do you have XDG_CONFIG_HOME set in your environment before you run emerge? I just want to identify the root cause before adding a workaround as requested in bug 499202.
(In reply to Mike Gilbert from comment #5) > Helmut: Do you have XDG_CONFIG_HOME set in your environment before you run > emerge? > > I just want to identify the root cause before adding a workaround as > requested in bug 499202. If I become root by su then XDG_CONFIG_HOME point to .config in my non-root home directory. If I become root by 'su - root' I had XDG_CONFIG_HOME set to /root/.config. Then I cleared that for root, but Portage tried to mkdir /root/.config.
(In reply to Helmut Jarausch from comment #6) > (In reply to Mike Gilbert from comment #5) > > Helmut: Do you have XDG_CONFIG_HOME set in your environment before you run > > emerge? > > > > I just want to identify the root cause before adding a workaround as > > requested in bug 499202. > > If I become root by su then XDG_CONFIG_HOME point to .config in my non-root > home directory. If I become root by 'su - root' I had XDG_CONFIG_HOME set to > /root/.config. Then I cleared that for root, but Portage tried to mkdir > /root/.config. for me XDG_CONFIG_HOME for root is empty.
I still cannot find where this mkdir call is coming from, and cannot reproduce this no matter how I set XDG_CONFIG_HOME.
Helmut: Can you show me your version and use flags for dev-python/matplotlib?
(In reply to Mike Gilbert from comment #8) > I still cannot find where this mkdir call is coming from, and cannot > reproduce this no matter how I set XDG_CONFIG_HOME. perhaps it is really connected with having .config/matplotlib for root and using FEATURES=-userpriv.
(In reply to Mike Gilbert from comment #9) > Helmut: Can you show me your version and use flags for dev-python/matplotlib? I have matplotlib-1.1.1 with the following use flags: cairo doc examples fltk gtk latex qt4 tk wxwidgets
(In reply to Justin Lecher from comment #10) > perhaps it is really connected with having .config/matplotlib for root and > using FEATURES=-userpriv. Where do you see FEATURES=-userpriv?
(In reply to Mike Gilbert from comment #12) > Where do you see FEATURES=-userpriv? Actually nowhere, but I assumed it because the problem appears with root's HOME and not with portage users one.
Helmut: Could you see if unsetting XDG_CONFIG_HOME in the ebuild allows the docs to build? --- cython-0.20.ebuild 23 Jan 2014 08:03:46 -0000 1.1 +++ cython-0.20.ebuild 29 Jan 2014 17:04:25 -0000 @@ -40,6 +40,7 @@ } python_compile_all() { + unset XDG_CONFIG_HOME use doc && emake -C docs html }
(In reply to Mike Gilbert from comment #14) > Helmut: Could you see if unsetting XDG_CONFIG_HOME in the ebuild allows the > docs to build? YES! many thanks, Helmut > > --- cython-0.20.ebuild 23 Jan 2014 08:03:46 -0000 1.1 > +++ cython-0.20.ebuild 29 Jan 2014 17:04:25 -0000 > @@ -40,6 +40,7 @@ > } > > python_compile_all() { > + unset XDG_CONFIG_HOME > use doc && emake -C docs html > }
+ 31 Jan 2014; Justin Lecher <jlec@gentoo.org> cython-0.20.ebuild: + Add workaround for XDG_CONFIG_HOME being present in env, #499068 +
