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Bug 486438 - sys-apps/portage-2.2.7 : dependency checking is broken
Summary: sys-apps/portage-2.2.7 : dependency checking is broken
Status: RESOLVED DUPLICATE of bug 486580
Alias: None
Product: Portage Development
Classification: Unclassified
Component: Unclassified (show other bugs)
Hardware: All Linux
: Normal normal with 1 vote (vote)
Assignee: Portage team
URL:
Whiteboard:
Keywords:
: 487968 (view as bug list)
Depends on:
Blocks: 487948
  Show dependency tree
 
Reported: 2013-09-29 09:31 UTC by Helmut Jarausch
Modified: 2013-11-26 21:01 UTC (History)
11 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge --info (emerge.info,7.85 KB, text/plain)
2013-10-07 02:12 UTC, Andrew Savchenko
Details
emerge --info (emerge.info,5.82 KB, text/plain)
2013-10-09 09:20 UTC, Dmitri Bogomolov
Details
emerge --info (emerge.info,5.55 KB, text/plain)
2013-10-11 13:45 UTC, gordon
Details

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Description Helmut Jarausch 2013-09-29 09:31:07 UTC
After a 3 weeks pause I had to update/re-emerge more than 100 packages.
portage-2.2.7 as well as portage-9999 behave strangely.

The option keep-going has failed each time (out of more than 10 emerges),
therefore the bug below is very unpleasant.

Some package like the innocent dev-python/numpydoc have been re-emerged
('rR') each time, but even heavy weight packages like dev-python/PyQt4 and
dev-python/matplotlib have been re-emerged (nearly) each time.

And furthermore, portage couldn't handle the upgrade of app-text/poppler to
version 0.24.2.  I had to unmerge several (very) big packages, then upgrade
poppler and finally emerge these packages again.


emerge --info sys-apps/portage
Portage 2.2.7 (default/linux/amd64/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.11.0-rc6 x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.11.0-rc6-x86_64-AMD_Phenom-tm-_II_X4_940_Processor-with-gentoo-2.2
KiB Mem:     7907864 total,   1687292 free
KiB Swap:    1048572 total,   1048164 free
Timestamp of tree: Sun, 29 Sep 2013 06:45:01 +0000
ld GNU ld (GNU Binutils) 2.23.2
ccache version 3.1.9 [disabled]
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.5-r2, 3.3.3_pre20130922::progress
dev-util/ccache:          3.1.9-r2
dev-util/cmake:           2.8.11.1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.13.4, 1.14
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.6.4, 4.7.3-r1, 4.8.1, 4.9.0_pre9999::local
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.11 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo local sunrise
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-mtune=native -O2 -msse3 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/polkit-1/actions /var/lib/hsqldb /var/lib/neatx/home"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-mtune=native -O2 -msse3 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo "
LANG="en_US.iso88591"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage /usr/local/portage/layman/sunrise"
SYNC="rsync://rsync.informatik.RWTH-Aachen.de/gentoo-portage"
USE="3dnow 3dnowext 3dnowprefetch X a52 aac acl acpi alsa amd64 avahi berkdb branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam ffmpeg fftw firefox flac fortran fuse gdbm gfortran gif gimp gnome gpm gtk gtk3 iconv ipv6 jpeg kde lapack lcms libnotify mad mmx mmxext mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf png policykit ppds qt qt3support qt4 readline sdl session smp spell sqlite sqlite3 sse sse2 sse3 sse4a ssl startup-notification svg tcl tcpd threads tiff tk truetype udev udisks unicode upower usb vorbis wxwidgets x264 xcb xml xulrunner xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="pc multiboot" INPUT_DEVICES="keyboard mouse evdev wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en de" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="ati radeon fglrx" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

=================================================================
                        Package Settings
=================================================================

sys-apps/portage-9999 was built with the following:
USE="doc (ipc) (multilib) -build -epydoc (-pypy2_0) -python2 -python3 (-selinux) -xattr" ABI_X86="64" LINGUAS="-ru" PYTHON_TARGETS="python2_7 python3_3 (-pypy2_0) -python2_6 -python3_2 -python3_4"
Comment 1 Helmut Jarausch 2013-09-29 10:18:10 UTC
Here is an extreme example:

emerge -av1 x11-wm/xpra

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  rR    ] dev-python/setuptools-1.1.6  PYTHON_TARGETS="python2_7 python3_3 -pypy2_0 -python2_6 -python3_2" 0 kB
[ebuild  rR    ] dev-python/six-1.4.1  USE="-doc {-test}" PYTHON_TARGETS="python2_7 python3_3 -pypy2_0 -python2_6 -python3_2" 0 kB
[ebuild  rR    ] dev-python/sip-4.15.2:0/10  USE="-debug -doc" PYTHON_TARGETS="python2_7 python3_3 -python2_6 -python3_2" 0 kB
[ebuild  rR    ] dev-python/pyopenssl-0.13.1  USE="-doc" PYTHON_TARGETS="python2_7 python3_3 -pypy2_0 -python2_6 -python3_2" 0 kB
[ebuild  rR    ] dev-python/pytz-2013d  PYTHON_TARGETS="python2_7 python3_3 -pypy2_0 -python2_6 -python3_2" 0 kB
[ebuild  rR    ] dev-python/pillow-2.1.0  USE="jpeg lcms tiff tk truetype zlib -doc -examples -scanner {-test} -webp" PYTHON_TARGETS="python2_7 python3_3 -python2_6 -python3_2" 0 kB
[ebuild  rR    ] app-portage/gentoolkit-0.3.0.8-r1  PYTHON_TARGETS="python2_7 python3_3 -pypy2_0 -python2_6 -python3_2" 0 kB
[ebuild  rR    ] dev-python/numpydoc-0.4-r1  USE="{-test}" PYTHON_TARGETS="python2_7 -python2_6" 0 kB
[ebuild  rR    ] dev-python/PyQt4-4.10.3  USE="X dbus declarative help kde opengl script sql svg webkit -debug -doc -examples -multimedia -phonon -scripttools -xmlpatterns" PYTHON_TARGETS="python2_7 python3_3 -python2_6 -python3_2" 0 kB
[ebuild  rR    ] dev-python/matplotlib-1.3.0  USE="cairo doc examples fltk gtk gtk3 latex qt4 tk wxwidgets -excel {-test}" PYTHON_TARGETS="python2_7 python3_3 -python2_6 -python3_2" 0 kB
[ebuild     U  ] x11-wm/xpra-0.10.4 [0.10.1] USE="client clipboard opengl rencode x264 -csc -dec_av -pulseaudio -server -sound -vpx -webp" PYTHON_TARGETS="python2_7 -python2_6" 0 kB

Total: 11 packages (1 upgrade, 10 reinstalls), Size of downloads: 0 kB
Comment 2 Philipp Leonhardt 2013-09-29 17:36:38 UTC
Same problem for me, yesterday I had to reinstrall llvm for 6 times, while changing my system to ABI_X86

here's an example:

time emerge -uDNp world --verbose=n

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild   R    ] media-video/ffmpeg-0.10.8  USE="mmxext* ssse3* vdpau*" 
[ebuild     U  ] dev-lang/v8-3.20.17.12 [3.20.17.7]
[ebuild  rR    ] media-plugins/gst-plugins-x264-1.0.10 
[ebuild     U  ] dev-python/pygtk-2.24.0-r4 [2.24.0-r3]
[ebuild  rR    ] x11-libs/vte-0.28.2-r206 
[ebuild     U  ] sys-apps/util-linux-2.23.2-r2 [2.23.2-r1] USE="pam%* -tty-helpers*" 
[ebuild     U  ] sys-kernel/geek-sources-3.11.2 [3.11.1] USE="-lqx% -reiser4% -uksm%" 
[ebuild     U  ] sys-kernel/geek-sources-3.10.13 [3.10.12]
[ebuild   R    ] sys-block/gparted-0.16.1  USE="(-gtk%*)" 
[ebuild   R   #] media-libs/libsdl-1.2.15-r5  USE="custom-cflags*" 
[ebuild  rR    ] media-video/handbrake-0.9.9 
[ebuild  rR    ] app-cdr/gcdemu-2.1.0 
[ebuild     U  ] www-client/chromium-30.0.1599.65 [30.0.1599.37]
[ebuild     U  ] app-office/libreoffice-4.1.2.2-r1 [4.1.2.2]
[ebuild   R    ] gnome-base/gnome-3.8.0  USE="-fallback%"

real    3m48.071s
user    3m43.509s
sys     0m3.724s

btw: dependency calculation takes really long... I'm using an Intel(R) Core(TM) i7-3940XM and portage tree was in tmpfs
Comment 3 Otto A. Schell 2013-09-29 23:13:57 UTC
same again:
===============================================
?????? ~ # emerge -av dev-util/xxdiages

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N     ] dev-util/xxdi  PYTHON_TARGETS="python2_7" 1,729 kB
[ebuild  rR    ] app-office/scribus-1.4.3
[ebuild  rR    ] app-office/libreoffice-4.1.2.2-r1
[ebuild  rR    ] media-gfx/inkscape-0.48.4-r1 
[ebuild  rR    ] dev-python/PyQt4-4.10.3
.
.
.
====================================================================

Whatever I try to emerge, such bold bears as libreoffice, scibus et al 
wanted to be recompiled without any announced changes.
Of course Pentium4 machines would need ~27h compiling time for that…
Comment 4 Wonko 2013-10-06 21:59:16 UTC
I have the same problem, with libreoffice. It gets remerged whenever I update a package. I let emerge remerge LO when upgrading portage, then again when updating chromium. Still, whatever package I agoing to update (adobe-flash, claws-mail, xterm, ...), emerge also remerges LO.

I was running sys-apps/portage-2.2.0_alpha188, and when upgrading to 2.2.7, libreoffice was remerged along. I downgraded to 2.2.6, same behaviour.


Portage 2.2.7 (default/linux/amd64/13.0/desktop/kde, gcc-4.6.4, glibc-2.17, 3.10.1-gentoo x86_64)
=================================================================
System uname: Linux-3.10.1-gentoo-x86_64-AMD_FX-tm-4100_Quad-Core_Processor-with-gentoo-2.2
KiB Mem:    16170336 total,   1063872 free
KiB Swap:    4192252 total,   4192252 free
Timestamp of tree: Sun, 06 Oct 2013 10:15:01 +0000
ld GNU ld (GNU Binutils) 2.23.1
distcc 3.1 x86_64-pc-linux-gnu [disabled]
ccache version 3.1.9 [disabled]
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.6.8-r2, 2.7.5-r1, 3.2.5-r1, 3.3.2-r1
dev-util/ccache:          3.1.9-r1::science
dev-util/cmake:           2.8.11.1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6, 1.12.6, 1.13.2, 1.14
sys-devel/binutils:       2.23.1
sys-devel/gcc:            4.4.7, 4.5.4, 4.6.4, 4.7.3
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.9 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo zugaina nx kde enlightenment emacs dfreise proaudio science gamerlay xarthisius sunrise kde-sunset local
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-pipe -march=amdfam10 -O2          -floop-interchange -floop-strip-mine -floop-block          -msse -msse2 -msse3 -msse4a -msse4.1 -msse4.2 -m3dnow          -mcx16 -msahf -maes -mpclmul -mpopcnt -mabm -mlwp -mavx          --param l1-cache-size=16          --param l1-cache-line-size=64          --param l2-cache-size=2048"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/polkit-1/actions /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.2/ext-active/ /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.2/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.2/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /usr/share/X11/xkb /usr/share/openvpn/easy-rsa"
CXXFLAGS="-pipe -march=amdfam10 -O2          -floop-interchange -floop-strip-mine -floop-block          -msse -msse2 -msse3 -msse4a -msse4.1 -msse4.2 -m3dnow          -mcx16 -msahf -maes -mpclmul -mpopcnt -mabm -mlwp -mavx          --param l1-cache-size=16          --param l1-cache-line-size=64          --param l2-cache-size=2048"
DISTDIR="/var/portage/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --with-bdeps y --load-average=6.0"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg buildsyspkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="rsync://mirror.netcologne.de/gentoo/ http://gentoo.mneisen.org/ http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo"
LANG="de_DE.UTF8"
LC_ALL="C"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="--jobs --load 5"
PKGDIR="/var/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/portage/tmpfs"
PORTDIR="/var/portage/tree"
PORTDIR_OVERLAY="/var/portage/layman/zugaina /var/portage/layman/nx /var/portage/layman/kde /var/portage/layman/enlightenment /var/portage/layman/emacs /var/portage/layman/dfreise /var/portage/layman/pro-audio /var/portage/layman/science /var/portage/layman/gamerlay /var/portage/layman/xarthisius /var/portage/layman/sunrise /var/portage/layman/kde-sunset /var/portage/local"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="3dnow X a52 aac aalib acl acpi aim alsa amd64 apache2 apm audiofile bash-completion bcmath berkdb bluetooth branding bzip2 cairo calendar cdda cdparanoia cdr cli consolekit cracklib crypt ctype cups cvs cxx dbus declarative dga directfb dri dts dvb dvd dvdr emacs emboss encode exif fam fbcon ffmpeg firefox flac foomaticdb fortran ftp gd gdbm ggi gif gimp ginac git gnutls gphoto2 gpm gtk handbook hddtemp iconv icu ieee1394 imagemagick imlib ipv6 jabber java javascript jbig jpeg jpeg2k kde kipi latex lcms ldap libnotify lm_sensors lzma mad maildir matroska matrox mikmod mime mmx mng modplug modules motif mp3 mp4 mpeg mplayer mudflap multilib musepack musicbrainz nas ncurses nls nptl nsplugin ogg openal opengl openmp oss pam pango pch pcre pdf phonon php plasma plotutils png policykit ppds qt3support qt4 quicktime radius rdesktop readline recode ruby samba scanner sdl semantic-desktop session slang slp smp sndfile sockets sox speex spell sse sse2 sse3 ssl startup-notification subversion svg systemd tcpd theora threads tiff truetype udev udisks unicode upower usb videos vim-syntax visualization vnc vorbis win32codecs wma wmf wxwidgets wxwindows x264 xattr xcb xcomposite xine xinerama xml xosd xpm xscreensaver xv xvid zlib" ABI_X86="64 32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="cgi alias auth_basic authn_file authz_groupfile authz_host authz_owner authz_user dir mime userdir" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" FRITZCAPI_CARDS="fcpci" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en" LIRC_DEVICES="serial" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3 php5-4" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby19 ruby18" SANE_BACKENDS="canon_pp microtek plustek_pp" USERLAND="GNU" VIDEO_CARDS="radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 5 Andrew Savchenko gentoo-dev 2013-10-07 02:11:40 UTC
The same problem with sci-physics/root-5.34.* and sys-devel/llvm: neither package depends on other one, but root update triggers llvm rebuild and llvm slot change triggers root rebuild:

# emerge -av root

These are the packages that would be merged, in order:

[ebuild     U  ] sci-physics/root-5.34.10-r1::science [5.34.10::local] USE="X afs c++0x doc examples fftw fits graphviz htmldoc kerberos ldap math metric mysql opengl openmp postgres pythia6 pythia8 python qt4 reflex sqlite ssl xml xrootd -avahi -emacs -mpi -odbc -oracle (-prefix) -ruby -xinetd" PYTHON_SINGLE_TARGET="python2_7 -python2_6" PYTHON_TARGETS="python2_7 -python2_6" 0 kB
[ebuild  rR    ] sys-devel/llvm-3.3-r1:0/3.3  USE="clang doc libffi static-analyzer -debug -gold -multitarget -ocaml -python {-test} -udis86" ABI_X86="(64) -32 (-x32)" PYTHON_TARGETS="python2_7 -pypy2_0 -python2_6" VIDEO_CARDS="-radeon" 0 kB

# emerge -av llvm:0/3.2

These are the packages that would be merged, in order:

[ebuild  r  U  ] sci-physics/root-5.34.10-r1::science [5.34.10::local] USE="X afs c++0x doc examples fftw fits graphviz htmldoc kerberos ldap math metric mysql opengl openmp postgres pythia6 pythia8 python qt4 reflex sqlite ssl xml xrootd -avahi -emacs -mpi -odbc -oracle (-prefix) -ruby -xinetd" PYTHON_SINGLE_TARGET="python2_7 -python2_6" PYTHON_TARGETS="python2_7 -python2_6" 0 kB
[ebuild     UD ] sys-devel/llvm-3.2:0/3.2 [3.3-r1:0/3.3] USE="doc libffi vim-syntax%* -debug -gold -multitarget -ocaml {-test} -udis86 (-clang%*) (-python%) (-static-analyzer%*)" ABI_X86="(-32%) (-64%*) (-x32%)" PYTHON_TARGETS="(-pypy2_0%) (-python2_6%) (-python2_7%*)" VIDEO_CARDS="(-radeon%)" 0 kB

BTW why severity is changed to normal? World updates (and most of lesser updates) are not handled properly now.
Comment 6 Andrew Savchenko gentoo-dev 2013-10-07 02:12:45 UTC
Created attachment 360278 [details]
emerge --info
Comment 7 Andrew Savchenko gentoo-dev 2013-10-08 03:34:15 UTC
More craziness from portage... I just try to downgrade it to older (and hopefully saner) version:

# emerge -av =sys-apps/portage-2.2.6

These are the packages that would be merged, in order:

Calculating dependencies... done!              
[ebuild  rR    ] sci-physics/root-5.34.10-r2::local  USE="X afs c++0x doc examples fftw fits graphviz htmldoc kerberos ldap math metric mysql opengl openmp postgres pythia6 pythia8 python qt4 reflex sqlite ssl xml xrootd -avahi -emacs -minimal -mpi -odbc -oracle (-prefix) -ruby* -xinetd" PYTHON_SINGLE_TARGET="python2_7 -python2_6" PYTHON_TARGETS="python2_7 -python2_6" 0 kB
[ebuild     UD ] sys-apps/portage-2.2.6 [2.2.7] USE="doc (ipc) xattr -build -epydoc (-pypy2_0) -python2 -python3 (-selinux)" LINGUAS="ru" PYTHON_TARGETS="python2_7 python3_2 -pypy2_0 -python2_6 -python3_3 (-python3_4)" 0 kB
[ebuild  rR    ] sys-devel/llvm-3.3-r1:0/3.3  USE="clang doc libffi static-analyzer -debug -gold -multitarget -ocaml -python {-test} -udis86" ABI_X86="(64) -32 (-x32)" PYTHON_TARGETS="python2_7 -pypy2_0 -python2_6" VIDEO_CARDS="-radeon" 0 kB

Total: 3 packages (1 downgrade, 2 reinstalls), Size of downloads: 0 kB

Looks like susbslot dependency resolution is badly broken and maybe this is somehow related to newly installed packages.
Comment 8 Dmitri Bogomolov 2013-10-09 09:19:21 UTC
I did `emerge -va1 =sys-apps/portage-2.2.6` and got the list of 7 reinstalls for recently installed packages, again. It is very frustrating.

`emerge --info` will follow.
Comment 9 Dmitri Bogomolov 2013-10-09 09:20:51 UTC
Created attachment 360472 [details]
emerge --info
Comment 10 Dmitri Bogomolov 2013-10-09 14:07:16 UTC
(In reply to Dmitri Bogomolov from comment #8)
> I did `emerge -va1 =sys-apps/portage-2.2.6` and got the list of 7 reinstalls
> for recently installed packages, again.

Same story with 2.2.6 and 2.2.1.
Comment 11 Helmut Jarausch 2013-10-11 11:44:41 UTC
I must admit that the problem seems to have gone here.
I'm running the GIT version of portage.
And anyhow, a tree/profile update or a portage update seems to have solved
the problem.

Now, I have very few re-emerges which now do look reasonable.

Many thanks,
Helmut
Comment 12 gordon 2013-10-11 13:45:02 UTC
Have same problem but it hasn't been solved by emerging portage-9999, now I'm back to 2.2.7.
Comment 13 gordon 2013-10-11 13:45:55 UTC
Created attachment 360636 [details]
emerge --info
Comment 14 Brian Dolbec (RETIRED) gentoo-dev 2013-10-11 15:15:12 UTC
It is possible that it is a python-exec caused problem.

Try "emerge python-exec:2" then see if everything is back to normal.
Comment 15 rochus 2013-10-11 15:28:40 UTC
I have python-exec-2.0-r1 installed and still have this problem.
Comment 16 Dmitri Bogomolov 2013-10-11 16:29:28 UTC
(In reply to Brian Dolbec from comment #14)
> It is possible that it is a python-exec caused problem.
> 
> Try "emerge python-exec:2" then see if everything is back to normal.

It solved the problem for me.
Comment 17 Andrew Savchenko gentoo-dev 2013-10-11 16:58:11 UTC
emerge --ignore-built-slot-operator-deps y
allows to avoid this issue, but apparently this may left some slot-dependent packages broken.
Comment 18 Andrew Savchenko gentoo-dev 2013-10-11 17:07:31 UTC
(In reply to Brian Dolbec from comment #14)
> It is possible that it is a python-exec caused problem.
> 
> Try "emerge python-exec:2" then see if everything is back to normal.

emerge python-exec:2 doesn't help by itself, but if unmerge python-exec:0 afterwards, this helps.
Comment 19 rochus 2013-10-11 22:35:48 UTC
I tried unmerging python-exec:0 and although it seemed to work properly afterwards again when installing/updating new/specific packages, it will be pulled in again when invoking emerge --update --deep @world. So, it doesn't fully solve the problem yet, as something depends on python-exec:0. Note that due to this, I can't fully confirm that removing python-exec:0 solves the problem of dependency calculation for me - I simply didn't do enough trials before updating world.
Comment 20 Tom Wijsman (TomWij) (RETIRED) gentoo-dev 2013-10-14 23:21:38 UTC
*** Bug 487968 has been marked as a duplicate of this bug. ***
Comment 21 Ilya Gordeev 2013-10-15 11:49:43 UTC
Yes, this commands sequence:
# emerge -1 --ignore-built-slot-operator-deps python-exec:2
# emerge -C python-exec:0
solves my problem, described in https://bugs.gentoo.org/show_bug.cgi?id=487968
Comment 22 Helmut Jarausch 2013-10-15 12:04:22 UTC
(In reply to Ilya Gordeev from comment #21)
> Yes, this commands sequence:
> # emerge -1 --ignore-built-slot-operator-deps python-exec:2
> # emerge -C python-exec:0
> solves my problem, described in

Isn't  emerge -C python-exec:0  dangerous?

For me
emerge -vpc dev-python/python-exec:0  
shows that dev-python/python-exec-0.3.1 is pulled in by

emulation/virtualbox-4.2.18
app-pda/pilot-link-0.12.5-r1
dev-python/PyQt4-4.10.3
dev-python/pmw-1.3.3-r2
dev-python/pygobject-2.28.6-r54
dev-python/scientificpython-2.9.2
dev-python/statsmodels-0.4.3-r1
dev-python/wxpython-2.8.12.1-r1
dev-python/wxpython-2.9.4.1-r1
kde-base/kajongg-4.11.1
kde-base/krosspython-4.11.1
kde-base/pykde4-4.11.1
media-gfx/cropgui-0.1.1-r2
sys-fs/udiskie-0.5.0
virtual/python-json-0
x11-misc/alacarte-3.7.90

Don't you have any of these packages installed?
Do you just ignore those dependencies?

Helmut
Comment 23 Andrew Savchenko gentoo-dev 2013-10-15 13:10:41 UTC
I just ignored python-exec:0 deps. They don't affect runtime for me, though build time may be broken.
Comment 24 Andrew Savchenko gentoo-dev 2013-10-30 03:18:40 UTC
(In reply to Andrew Savchenko from comment #23)
> I just ignored python-exec:0 deps. They don't affect runtime for me, though
> build time may be broken.

Ooops, it brokes any java package builds: java runtime can't be selected.
So I have to restore python-exec:0.
Comment 25 Sebastian Luther (few) 2013-11-26 21:01:59 UTC

*** This bug has been marked as a duplicate of bug 486580 ***