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Bug 482462 - sci-biology/blossoc-1.4.0 - aclocal-1.13 fails with 'AM_CONFIG_HEADER': this macro is obsolete.
Summary: sci-biology/blossoc-1.4.0 - aclocal-1.13 fails with 'AM_CONFIG_HEADER': this ...
Status: UNCONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: automake-1.13
  Show dependency tree
 
Reported: 2013-08-25 22:11 UTC by Martin Mokrejš
Modified: 2013-08-26 00:19 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Martin Mokrejš 2013-08-25 22:11:00 UTC
>>> Emerging (1 of 1) sci-biology/blossoc-1.4.0
 * blossoc-1.4.0.tar.gz SHA256 size ;-) ...                                                                                                                                                                                                                                                                             [ ok ]

>>> Unpacking source...
>>> Unpacking blossoc-1.4.0.tar.gz to /mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/work
>>> Source unpacked in /mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/work

>>> Preparing source in /mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/work/blossoc-1.4.0 ...
 * Applying blossoc-1.4.0-gcc43.patch ...                                                                                                                                                                                                                                                                               [ ok ]
 * Running eautoreconf in '/mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/work/blossoc-1.4.0' ...
 * Running aclocal -I m4 ...                                                                                                                                                                                                                                                                                            [ !! ]

 * Failed Running aclocal !
 * 
 * Include in your bugreport the contents of:
 * 
 *   /mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/temp/aclocal.out

 * ERROR: sci-biology/blossoc-1.4.0 failed (prepare phase):
 *   Failed Running aclocal !
 * 
 * Call stack:
 *     ebuild.sh, line   93:  Called src_prepare
 *   environment, line 2961:  Called eautoreconf
 *   environment, line  825:  Called eaclocal
 *   environment, line  728:  Called autotools_run_tool '--at-m4flags' 'aclocal' '-I' 'm4'
 *   environment, line  598:  Called die
 * The specific snippet of code:
 *           die "Failed Running $1 !";
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/blossoc-1.4.0'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/blossoc-1.4.0'`.
/usr/lib64/portage/bin/isolated-functions.sh: line 215: wait: `Failed Running aclocal !': not a pid or valid job spec
 * The complete build log is located at '/mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/temp/build.log'.
 * The ebuild environment file is located at '/mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/temp/environment'.
 * Working directory: '/mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/work/blossoc-1.4.0'
 * S: '/mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/work/blossoc-1.4.0'



/mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/temp/aclocal.out says:

***** aclocal *****
***** PWD: /mnt/1TB/var/tmp/portage/sci-biology/blossoc-1.4.0/work/blossoc-1.4.0
***** aclocal -I m4

aclocal-1.13: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:3: error: 'AM_CONFIG_HEADER': this macro is obsolete.
    You should use the 'AC_CONFIG_HEADERS' macro instead.
/usr/share/aclocal-1.13/obsolete-err.m4:12: AM_CONFIG_HEADER is expanded from...
configure.in:3: the top level
autom4te-2.69: /usr/bin/m4 failed with exit status: 1
aclocal-1.13: error: echo failed with exit status: 1


# emerge --info
Portage 2.1.12.5 (default/linux/amd64/13.0, gcc-4.7.2, glibc-2.17, 3.10.9-default-pciehp x86_64)
=================================================================
System uname: Linux-3.10.9-default-pciehp-x86_64-Intel-R-_Core-TM-_i7-2640M_CPU_@_2.80GHz-with-gentoo-2.2
KiB Mem:    16304192 total,   4478112 free
KiB Swap:    4998972 total,   4973656 free
Timestamp of tree: Sat, 24 Aug 2013 13:30:01 +0000
ld GNU ld (GNU Binutils) 2.23.1
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.5.4-r5, 2.6.8-r3, 2.7.5-r2, 3.2.5-r2, 3.3.2-r2
dev-util/cmake:           2.8.10.2-r2
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.9.6-r3, 1.11.6, 1.12.6, 1.13.1
sys-devel/binutils:       2.23.1
sys-devel/gcc:            4.2.4-r1, 4.3.6-r1, 4.5.4, 4.6.3, 4.7.2-r1
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.8 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo gentoo-haskell science x-portage x-layman
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-ggdb -pipe -msse  -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4 -mavx -maes -mpclmul -mpopcnt -march=corei7-avx"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-ggdb -pipe -msse  -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4 -mavx -maes -mpclmul -mpopcnt -march=corei7-avx"
DISTDIR="/mnt/1TB/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/mnt/1TB/var/tmp"
PORTDIR="/mnt/1TB/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/haskell /home/mmokrejs/proj/sci /usr/local/portage /var/lib/layman"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X acl acpi alsa amd64 amr apache apache2 berkdb bluetooth bzip2 cairo cgi cli cracklib crypt cryptlib cups cxx dbus device-mapper dhcp dri emboss encode fax ffmpeg flac fontconfig fortran gd gdbm gimp gpm gtk gudev hal hpijs hwdb iconv id3tag innodb java jce jpeg jpg keymap ladspa laptop lcms libnotify lm_sensors mad mmx modules mpi mpich2 multilib mysql ncurses nfs nls nptl nptlonly nsplugin ntfsprogs ocr ogg opengl openmp openssl pam parport pcre pdf perl php png ppds pppd python readline resolvconf scanner server session sndfile sqlite sse sse2 sse3 ssl suexec svg syslog tcpd threads tiff tk truetype udev unicode usb vim-syntax wavpack x11 xml xorg zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authz_host cgi cgid deflate dir env filter include info mime mime_magic remoteip setenvif status userdir vhost_alias rewrite" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en cs cz" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-4 php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="vesa vmware fbdev intel i915" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON