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Bug 459878 - sci-biology/ncbi-tools does not respect CC
Summary: sci-biology/ncbi-tools does not respect CC
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Andrey Kislyuk (RETIRED)
Depends on:
Blocks: tc-directly
  Show dependency tree
Reported: 2013-03-01 14:30 UTC by Agostino Sarubbo
Modified: 2013-03-01 14:53 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Agostino Sarubbo gentoo-dev 2013-03-01 14:30:43 UTC
You receive this bug because this package does not respect my system's CC ( x86_64-pc-linux-gnu-gcc - /usr/bin/x86_64-pc-linux-gnu-gcc ) and calls directly gcc -/usr/bin/gcc
The possible solutions to fix this issue are:
1)Fix the buildsystem, if you can
2)inherit toolchain-funcs and use tc-export CC
3)inherit toolchain-funcs and use emake CC="$(tc-getCC)"

gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c  -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pattern.c
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2013-03-01 14:53:35 UTC
+*ncbi-tools-2.2.26-r2 (01 Mar 2013)
+  01 Mar 2013; Justin Lecher <> -ncbi-tools-2.2.26-r1.ebuild,
+  +ncbi-tools-2.2.26-r2.ebuild:
+  Fix all config files, #459720, #459726, #459878

Please test and reopen if needed