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Bug 459726 - sci-biology/ncbi-tools does not respect LDFLAGS
Summary: sci-biology/ncbi-tools does not respect LDFLAGS
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: PPC64 Linux
: Normal QA (vote)
Assignee: Andrey Kislyuk (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: ldflags 458112
  Show dependency tree
 
Reported: 2013-02-28 15:22 UTC by Agostino Sarubbo
Modified: 2013-03-01 14:53 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build log (ncbi-tools-2.2.26:20130228-150211.log,253.36 KB, text/plain)
2013-02-28 15:27 UTC, Agostino Sarubbo
Details
build log (ncbi-tools-2.2.26-r1:20130301-141055.log,166.30 KB, text/plain)
2013-03-01 14:46 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2013-02-28 15:22:56 UTC
You receive this bug because this package does not respect my system's LDFLAGS


 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/entrcmd
 * /usr/bin/sbtedit
 * /usr/bin/asn2gb
 * /usr/bin/fa2htgs
 * /usr/bin/seqtest
 * /usr/bin/gene2xml
 * /usr/bin/formatdb
 * /usr/bin/checksub
 * /usr/bin/asntool
 * /usr/bin/demo_regexp
 * /usr/bin/asn2xml
 * /usr/bin/demo_regexp_grep
 * /usr/bin/testcore
 * /usr/bin/cdscan-ncbi
 * /usr/bin/impala
 * /usr/bin/testval
 * /usr/bin/asn2ff
 * /usr/bin/megablast
 * /usr/bin/Nentrez
 * /usr/bin/blastpgp
 * /usr/bin/blastall
 * /usr/bin/asn2idx
 * /usr/bin/getmesh
 * /usr/bin/vecscreen
 * /usr/bin/gil2bin
 * /usr/bin/tbl2asn
 * /usr/bin/blastcl3
 * /usr/bin/debruijn
 * /usr/bin/seedtop
 * /usr/bin/Psequin
 * /usr/bin/fastacmd
 * /usr/bin/makemat
 * /usr/bin/entrez2
 * /usr/bin/testobj
 * /usr/bin/dosimple
 * /usr/bin/bl2seq
 * /usr/bin/makeset
 * /usr/bin/idfetch
 * /usr/bin/getpub
 * /usr/bin/errhdr
 * /usr/bin/test_regexp
 * /usr/bin/taxblast
 * /usr/bin/copymat
 * /usr/bin/udv
 * /usr/bin/asn2asn
 * /usr/bin/ddv
 * /usr/bin/blastclust
 * /usr/bin/ncbisort
 * /usr/bin/asndhuff
 * /usr/bin/asn2all
 * /usr/bin/findspl
 * /usr/bin/indexpub
 * /usr/bin/formatrpsdb
 * /usr/bin/rpsblast
Comment 1 Agostino Sarubbo gentoo-dev 2013-02-28 15:27:27 UTC
Created attachment 340508 [details]
build log
Comment 2 Justin Lecher gentoo-dev 2013-03-01 09:15:19 UTC
+*ncbi-tools-2.2.26-r1 (01 Mar 2013)
+
+  01 Mar 2013; Justin Lecher <jlec@gentoo.org> +ncbi-tools-2.2.26-r1.ebuild:
+  Clean heuristic to fix build env, #459720 and #459726
+


Please retry with revision 1 and reopen if still exists.
Comment 3 Agostino Sarubbo gentoo-dev 2013-03-01 14:28:26 UTC
it still happens on ppc64
Comment 4 Justin Lecher gentoo-dev 2013-03-01 14:37:45 UTC
could I get the latest build.log?
Comment 5 Agostino Sarubbo gentoo-dev 2013-03-01 14:46:08 UTC
Created attachment 340638 [details]
build log
Comment 6 Justin Lecher gentoo-dev 2013-03-01 14:53:28 UTC
+*ncbi-tools-2.2.26-r2 (01 Mar 2013)
+
+  01 Mar 2013; Justin Lecher <jlec@gentoo.org> -ncbi-tools-2.2.26-r1.ebuild,
+  +ncbi-tools-2.2.26-r2.ebuild:
+  Fix all config files, #459720, #459726, #459878
+


Please test and reopen if needed