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Bug 457060 - =sci-libs/vtk-5.10.1 with >dev-lang/R-2.10 - CMake Error: The following variables are used in this project, but they are set to NOTFOUND. - R_LIBRARY_BASE
Summary: =sci-libs/vtk-5.10.1 with >dev-lang/R-2.10 - CMake Error: The following varia...
Status: RESOLVED UPSTREAM
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Justin Lecher (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-02-13 10:26 UTC by John (EBo) David
Modified: 2013-02-18 22:19 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge --info (emerge.info,5.22 KB, text/plain)
2013-02-13 10:26 UTC, John (EBo) David
Details
full build log (vtk-5.10.1-build.log,20.75 KB, text/plain)
2013-02-15 06:23 UTC, John (EBo) David
Details

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Description John (EBo) David 2013-02-13 10:26:36 UTC
Created attachment 338758 [details]
emerge --info

a recent upgrade of the system caused builds for vtk (both 5.10.0 and 5.10.1) to fail with the following error (v5.10.1 given as example, but both version produce the same error):

==========
CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake files:
R_LIBRARY_BASE
    linked by target "vtkGraphics" in directory /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1/Graphics
    linked by target "vtkGraphics" in directory /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1/Graphics
==========

Looking on the net I find the following possible explination <http://vtk.org/Bug/bug_relationship_graph.php?bug_id=10779&graph=relation>:

"...the[re] is no libR{lapack,blas}.so anmore, but everything is included in libRmath.so..." with notes for a patch they use on Gentoo.

I have not had time to track down, integrate, and test the patch.
Comment 1 Jeroen Roovers (RETIRED) gentoo-dev 2013-02-13 19:43:40 UTC
Please attach the entire build log to this bug report.
Comment 2 Jeroen Roovers (RETIRED) gentoo-dev 2013-02-13 19:43:56 UTC
Comment on attachment 338758 [details]
emerge --info

The build log is "required" too.
Comment 3 John (EBo) David 2013-02-15 06:23:31 UTC
Created attachment 338954 [details]
full build log

sorry about the dalay and not including the build log.
Comment 4 John (EBo) David 2013-02-18 22:19:46 UTC
The problem turned out to be a subtle issue with an R update.  The details can be found here:

https://bugs.gentoo.org/show_bug.cgi?id=457064

I was able to build sci-libs/vtk-5.10.0