Bug 440916 – dev-libs/boost-1.49.0-r2 file collissions with unclaimed files

• Status: RESOLVED WONTFIX
• Product: Gentoo Linux

[Description Michael Weber (RETIRED) 2012-11-02 09:33:20 UTC]

I saw this file collission on 6 machines (3 different setups) tonight,

my fix is to run rm rm command from https://xmw.de/s/tCnM and 
  ebuild /usr/portage/dev-libs/boost/boost-1.49.0-r2.ebuild qmerge clean
which spares another src_compile run.


Portage 2.1.11.31 (default/linux/amd64/10.0/desktop/gnome, gcc-4.6.3, glibc-2.15-r3, 3.6.2-gentoo-gaf.2 x86_64)
=================================================================
System uname: Linux-3.6.2-gentoo-gaf.2-x86_64-AMD_Phenom-tm-_II_X4_955_Processor-with-gentoo-2.1
Timestamp of tree: Fri, 02 Nov 2012 07:00:01 +0000
ld GNU ld (GNU Binutils) 2.22
distcc 3.1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.3-r2, 3.2.3
dev-util/cmake:           2.8.9
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.1-r1
sys-apps/openrc:          0.9.8.4
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.10.3, 1.11.6
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.5.4, 4.6.3, 4.7.2
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.4-r2 (virtual/os-headers)
sys-libs/glibc:           2.15-r3
Repositories: gentoo x-local-overlay xmw java-overlay sunrise lorem_ipsum emacs mozilla
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=native -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/bin/trivdm /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=native -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --binpkg-respect-use y"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs compress-build-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="https://lore.xmw.de/gentoo/"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en en_US en_GB de de_DE"
MAKEOPTS="-j8"
PKGDIR="/var/tmp/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/etc/portage/local-overlay /var/lib/layman/xmw /var/lib/layman/java-overlay /var/lib/layman/sunrise /var/lib/layman/lorem_ipsum /var/lib/layman/emacs /var/lib/layman/mozilla"
SYNC="rsync://lore.xmw.de/gentoo-portage/"
USE="3dnow 3dnowext X a52 aac acl acpi alsa amd64 bash-completion berkdb branding bzip2 cairo cdda cdinstall cdr cli colord cracklib crypt cups curl cxx dbus djvu dri dts dvd dvdr emacs emboss encode evo exif fam fbcon ffmpeg firefox flac fontconfig fortran gdbm gif git glut gmp gnome gnome-keyring gnome-online-accounts gnutls gpm gstreamer gtk guile iconv imap ipv6 jack java jbig jpeg jpeg2k kde kerberos lame latex lcms ldap libnotify mad matroska mmx mmxext mng modules mp3 mp4 mpeg mpi mudflap multilib nas nautilus ncurses networking nfsv4 nls nptl nsplugin ogg openal opengl openmp pam pango pcre pdf perl plotutils png postscript ppds pppd python qt3support qt4 rar readline sdl session socialweb spell sse sse2 sse3 ssl startup-notification subversion svg symlink tcpd threads tiff tk truetype udev udisks unicode upower usb v4l v4l2 vim-syntax vorbis wmf wxwidgets x264 xcb xft xml xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias proxy_http proxy" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_US en_GB de de_DE" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" QEMU_SOFTMMU_TARGETS="x86_64 i386" QEMU_USER_TARGETS="x86_64 i386" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Michael Weber (RETIRED) 2012-11-02 09:42:28 UTC]

Created attachment 328048 [details]
build.log

This might be an effect of the developrt profile,
The files are unclaimed and emerge should not stop, normally.



Portage 2.1.11.31 (default/linux/amd64/10.0/developer, gcc-4.6.3, glibc-2.16.0, 3.6.2-gentoo-x.0 x86_64)
=================================================================
System uname: Linux-3.6.2-gentoo-x.0-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T7500_@_2.20GHz-with-gentoo-2.1
Timestamp of tree: Unknown
ld GNU ld (GNU Binutils) 2.22
distcc 3.1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.5.4-r4, 2.6.8, 2.7.3-r2, 3.1.5, 3.2.3
dev-util/cmake:           2.8.9
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.1-r1
sys-apps/openrc:          0.11.2
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.10.3, 1.11.6, 1.12.4
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.5.4, 4.6.3, 4.7.2
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.4-r2 (virtual/os-headers)
sys-libs/glibc:           2.16.0
Repositories: gentoo local xmw gamerlay-stable java-overlay sunrise lorem_ipsum
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -mcx16 -msahf --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=4096 -mtune=core2 -mfpmath=sse -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/bin/trivdm /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=core2 -mcx16 -msahf --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=4096 -mtune=core2 -mfpmath=sse -O2 -pipe"
DISTDIR="/var/cache/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs collision-protect compress-build-logs config-protect-if-modified distlocks downgrade-backup ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms sign split-log strict test-fail-continue unknown-features-warn unmerge-backup unmerge-logs unmerge-orphans userfetch userpriv usersandbox"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,--hash-style=gnu -Wl,-O1 -Wl,--as-needed"
LINGUAS="de en en_US en_GB"
PKGDIR="/var/cache/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage /var/lib/xmw-overlay /var/lib/gamerlay /var/lib/layman/java-overlay /var/lib/layman/sunrise /var/lib/layman/lorem_ipsum"
SYNC="cvs://[e-mail]:/var/cvsroot"
USE="X a52 aac aalib acl alsa amd64 ao bash-completion berkdb bluetooth bzip2 cairo cdda cddb cdparanoia cdr cli cracklib crypt cups curl cxx dbus dga djvu dri dts dv dvd dvdr emacs emboss encode exif faac faad fam fbcon ffmpeg fftw firefox flac fontconfig fortran gdbm gif gimp git glut gnutls gphoto2 gpm gs gstreamer gtk iconv id3tag imagemagick ipv6 java jbig jpeg jpeg2k lame latex lcms libsamplerate lzma lzo mad mmx mng modules mp3 mp4 mpeg mplayer mudflap multilib nas ncurses nls nptl nsplugin ogg openal openexr opengl openmp pam pango pch pcmcia pcre pdf perl png ppds pppd python qt3support qt4 quicktime raw readline rle sdl session smp speex spell sqlite sqlite3 sse sse2 ssl ssse3 startup-notification subversion svg symlink taglib tcl tcpd theora threads tiff tk truetype udisks unicode upnp upower usb vim-syntax vorbis wavpack webkit wxwidgets x264 xcb xfs xft xine xinerama xml xscreensaver xv xvid zlib zsh-completion" ALSA_CARDS="intel-hda" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en en_US en_GB" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" QEMU_SOFTMMU_TARGETS="x86_64 arm ppc ppc64" QEMU_USER_TARGETS="x86_64 arm ppc ppc64" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.5 2.6 2.7 3.1 3.2"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 2 Anders Hellgren 2012-11-02 20:02:51 UTC]

(In reply to comment #1)
> Created attachment 328048 [details]
> build.log
> 
> This might be an effect of the developrt profile,
> The files are unclaimed and emerge should not stop, normally.
> 
> FEATURES="assume-digests binpkg-logs collision-protect compress-build-logs
> config-protect-if-modified distlocks downgrade-backup ebuild-locks
> fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms sign
> split-log strict test-fail-continue unknown-features-warn unmerge-backup
> unmerge-logs unmerge-orphans userfetch userpriv usersandbox"

Not related to the developer profile, but collision-protect in FEATURES will cause this problem.

Would have been nice with a news item before this change.

[Comment 3 Matthew Thode ( prometheanfire ) 2012-11-04 03:46:12 UTC]

collision-protect makes this sad, removing this 'fixed' it.

[Comment 4 Marco Ziebell 2012-11-05 20:41:04 UTC]

Can confirm this bug.
collision-protect causes a stop in the install-phase

[Comment 5 Michael Weber (RETIRED) 2012-11-05 21:41:16 UTC]

Yeah, I think we all know how collision-protect work and we agree on having it turned on.

The point is, why aren't these files removed with eselect-boost?

[Comment 6 Diego Elio Pettenò (RETIRED) 2012-11-08 03:28:29 UTC]

I really would like not to have to resort to pkg_*.

You can replace collision-protect with protect-owned and that'll take care of it...