* Detected file collision(s):
* Searching all installed packages for file collisions...
* Press Ctrl-C to Stop
* Package 'media-gfx/graphviz-2.28.0' NOT merged due to file collisions.
* If necessary, refer to your elog messages for the whole content of the
* above message.
See also sci-chemistry/tisean and sci-chemistry/cluster.
I communicated on this with both, graphviz and phrap developers. Phil Green (phrap developer) says cluster binary is not called directly by any other phrap package component. We can rename it freely. Justin, I propose renaming cluster to cluster_phrap.
The graphviz developers from AT&T were not optimistic about any change.
+*phrap-1.080812-r1 (16 Jun 2015)
+ 16 Jun 2015; Justin Lecher <firstname.lastname@example.org> +phrap-1.080812-r1.ebuild,
+ Bump to EAPI=5 and fix file collision, bug #422643; thanks Martin Mokrejs
+ contacting upstream regarding this issue