'emerge world' fails with: root@impala:/usr/local/portage/sci-biology(326)# emerge -uvND world These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] sci-biology/embassy-memenew-4.0.0-r1 [4.0.0] USE="X mysql%* pdf%* png postgres%* -static-libs%" 0 kB [0=>1] ... >>> Emerging (1 of 11) sci-biology/embassy-memenew-4.0.0-r1 from science * Fetching files in the background. To view fetch progress, run * `tail -f /var/log/emerge-fetch.log` in another terminal. !!! Fetched file: embassy-memenew-4.0.0-r1.tar.gz VERIFY FAILED! !!! Reason: Insufficient data for checksum verification !!! Got: !!! Expected: MD5 RMD160 SHA1 SHA256 SHA512 WHIRLPOOL * Fetch failed for 'sci-biology/embassy-memenew-4.0.0-r1', Log file: There is not any /usr/portage/distfiles/embassy-memenew-4.0.0-r1.tar.gz file: root@impala:/usr/local/portage/sci-biology(327)# ll /usr/portage/distfiles/embassy-memenew-* /bin/ls: cannot access /usr/portage/distfiles/embassy-memenew-*: No such file or directory
After adding the SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/old/6.3.1/MEMENEW-4.0.0.tar.gz" to embassy-memenew-4.0.0-r1.ebuild 'emerge embassy-memenew' fails with: >>> Downloading 'ftp://emboss.open-bio.org/pub/EMBOSS/old/6.3.1/MEMENEW-4.0.0.tar.gz' --2011-12-26 12:20:23-- ftp://emboss.open-bio.org/pub/EMBOSS/old/6.3.1/MEMENEW-4.0.0.tar.gz => `/usr/portage_impala/distfiles/MEMENEW-4.0.0.tar.gz' Resolving emboss.open-bio.org (emboss.open-bio.org)... 208.94.50.58 Connecting to emboss.open-bio.org (emboss.open-bio.org)|208.94.50.58|:21... connected. Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/EMBOSS/old/6.3.1 ... done. ==> SIZE MEMENEW-4.0.0.tar.gz ... 513418 ==> PASV ... done. ==> RETR MEMENEW-4.0.0.tar.gz ... done. Length: 513418 (501K) (unauthoritative) 100%[======================================>] 513,418 162K/s in 3.1s 2011-12-26 12:20:29 (162 KB/s) - `/usr/portage_impala/distfiles/MEMENEW-4.0.0.tar.gz' saved [513418] !!! Fetched file: MEMENEW-4.0.0.tar.gz VERIFY FAILED! !!! Reason: Filesize does not match recorded size !!! Got: 513418 !!! Expected: 93600
Created attachment 296969 [details] After deleting the manifest I was able to emerge embassy-memenew with this ebuild.
# Justin Lecher <jlec@gentoo.org> (20 Feb 2012) # They are broken in one or the other way # Need to be bumped to emboss-6.4.0 sci-biology/emboss::science sci-biology/embassy::science sci-biology/embassy-cbstools::science sci-biology/embassy-domainatrix::science sci-biology/embassy-domalign::science sci-biology/embassy-domsearch::science sci-biology/embassy-emnu::science sci-biology/embassy-esim4::science sci-biology/embassy-hmmer::science sci-biology/embassy-iprscan::science sci-biology/embassy-mse::science sci-biology/embassy-phylipnew::science sci-biology/embassy-signature::science sci-biology/embassy-structure::science sci-biology/embassy-topo::science sci-biology/embassy-vienna::science