PNG 1.5 upgrade breaks R: x86_64-pc-linux-gnu-gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -DQT_SHARED -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng15 -I/usr/include/qt4 -I/usr/include/qt4/QtGui -I/usr/include/libdrm -I/usr/include/qt4/QtCore -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=native -O2 -pipe -c rbitmap.c -o rbitmap.o rbitmap.c: In function ‘my_png_error’: rbitmap.c:73:20: error: dereferencing pointer to incomplete type rbitmap.c: In function ‘R_SaveAsPng’: rbitmap.c:127:9: error: dereferencing pointer to incomplete type make[4]: *** [rbitmap.o] Error 1 make[4]: *** Waiting for unfinished jobs.... make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/X11' make[3]: *** [R] Error 2 make[3]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/X11' make[2]: *** [make.X11] Error 2 make[2]: *** Waiting for unfinished jobs.... x86_64-pc-linux-gnu-gcc -std=gnu99 -shared -Wl,-O1 -Wl,--as-needed -o libRlapack.so dlamch.o dlapack0.o dlapack1.o dlapack2.o dlapack3.o dlapack4.o cmplx.o -lblas make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack' make[4]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack' x86_64-pc-linux-gnu-gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=native -O2 -pipe -c Lapack.c -o Lapack.o x86_64-pc-linux-gnu-gcc -std=gnu99 -shared -Wl,-O1 -Wl,--as-needed -o lapack.so Lapack.o -L../../../lib -lR -L../../../lib -lRlapack -lblas -lgfortran -lm make[5]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack' /var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/lib/libRlapack.so is unchanged make[5]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack' make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack' make[3]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack' make[2]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules' make[1]: *** [R] Error 1 make[1]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src' make: *** [R] Error 1 emake failed Reproducible: Always Steps to Reproduce: USE=png emerge dev-lang/R Portage 2.1.10.28 (default/linux/amd64/10.0/desktop/kde, gcc-4.5.3, glibc-2.12.2-r0, 2.6.39-gentoo-r3 x86_64) ================================================================= System uname: Linux-2.6.39-gentoo-r3-x86_64-Intel-R-_Core-TM-_i7_CPU_Q_740_@_1.73GHz-with-gentoo-2.0.3 Timestamp of tree: Mon, 17 Oct 2011 07:00:01 +0000 app-shells/bash: 4.1_p9 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.1-r1::sage-on-gentoo, 3.1.3-r1 dev-util/cmake: 2.8.4-r1 dev-util/pkgconfig: 0.26 sys-apps/baselayout: 2.0.3 sys-apps/openrc: 0.8.3-r1 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.13, 2.68 sys-devel/automake: 1.9.6-r3, 1.11.1 sys-devel/binutils: 2.21.1-r1 sys-devel/gcc: 4.5.3-r1 sys-devel/gcc-config: 1.4.1-r1 sys-devel/libtool: 2.4-r3 sys-devel/make: 3.82-r1 sys-kernel/linux-headers: 2.6.39 (virtual/os-headers) sys-libs/glibc: 2.12.2 Repositories: gentoo sage-on-gentoo cschwan-overlay ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xorg.conf.d /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--keep-going" FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles multilib-strict news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://distfiles.gentoo.org" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en" MAKEOPTS="-j8" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/home/cschwan/projects/sage-on-gentoo /home/cschwan/projects/portage-overlay" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa amd64 berkdb branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cxx dbus declarative dri dts dvd dvdr emboss encode exif fam firefox flac gdbm gdu gif iconv jpeg kde kipi lcms mad minimal mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf phonon plasma png policykit ppds pppd qt3support qt4 readline sdl semantic-desktop session spell sse sse2 ssl startup-notification svg sysfs tcpd tiff truetype udev unicode usb vorbis x264 xcb xcomposite xinerama xml xorg xscreensaver xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" SANE_BACKENDS="snapscan" USERLAND="GNU" VIDEO_CARDS="radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 290033 [details] build log
*** This bug has been marked as a duplicate of bug 366223 ***
