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Bug 386365 - dev-python/numpy-1.6.1-r1 always uses dev-lang/ifc, if it is installed
Summary: dev-python/numpy-1.6.1-r1 always uses dev-lang/ifc, if it is installed
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
Depends on:
Reported: 2011-10-08 15:37 UTC by Thomas Sachau
Modified: 2012-12-07 08:25 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

build.log for numpy-1.6.1-r1 with dev-lang/ifc installed (dev-python:numpy-1.6.1-r1:20111009-152919.log,487.12 KB, text/plain)
2011-10-09 15:34 UTC, Thomas Sachau

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Description Thomas Sachau gentoo-dev 2011-10-08 15:37:58 UTC
I have gcc installed with fortran USE flag enabled, so i have a working fortran compiler on my system. But when dev-lang/ifc is installed in parallel, dev-python/numpy always uses the intel compiler, which then fails with sandbox access violations, since i have no license for the intel compiler (and i did not install it myself, it was pulled in due to dependencies).

Expected result: numpy respects the FC variable and uses the fortran compiler from gcc instead of always using the ifc, if it is found on the system, thus resulting in a finishing update/install.
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2011-10-09 11:33:01 UTC
Please attach a builg.log from numpy, the output gfortran -v and emerge --info, because on my system it works without problems.

My idea, is that it works during compilation but maybe the "configure" step tries to execute ifort.
Comment 2 Thomas Sachau gentoo-dev 2011-10-09 15:34:24 UTC
Created attachment 289363 [details]
build.log for numpy-1.6.1-r1 with dev-lang/ifc installed
Comment 3 Thomas Sachau gentoo-dev 2011-10-09 15:35:14 UTC
emerge --info:

Portage 2.2.0_alpha64-r1 (hardened/linux/amd64/10.0, gcc-4.5.3, glibc-2.13-r4, 3.0.6-gentoo x86_64)
System uname: Linux-3.0.6-gentoo-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q6600_@_2.40GHz-with-gentoo-2.1
Timestamp of tree: Thu Oct 6 07:40:43 CEST 2011
app-shells/bash:          4.2_p10
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.6.6-r1, 2.7.2-r3
dev-util/cmake:           2.8.5-r2
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.1
sys-apps/openrc:          0.9.3-r1
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.1-r1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r3
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 2.6.39 (virtual/os-headers)
sys-libs/glibc:           2.13-r4
Repositories: gentoo enlightenment sunrise multilib Meins
Installed sets: @enlightenment, @fonts, @system
ACCEPT_KEYWORDS="amd64 ~amd64"
CFLAGS="-march=native -O2 -pipe"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
FEATURES="assume-digests binpkg-logs collision-protect distlocks ebuild-locks fixlafiles fixpackages metadata-transfer news parallel-fetch preserve-libs protect-owned sandbox sfperms sign strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox"
LDFLAGS="-Wl,--as-needed -Wl,--hash-style=gnu"
MAKEOPTS="-j5 --load-average=8"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTDIR_OVERLAY="/usr/local/portage/layman/enlightenment /usr/local/portage/layman/sunrise /usr/local/portage/layman/multilib /usr/local/portage"
USE="3dnow X alsa amd64 berkdb cli cracklib crypt cups custom-cflags custom-cxxflags custom-optimization cxx dri gpm hardened java5 java6 justify mmx modules mudflap multilib ncurses nls nptl nptlonly nsplugin ogg openmp pam pax_kernel pppd readline scanner session sse sse2 ssl sysfs tcpd unicode urandom vorbis xorg zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de" MULTILIB_ABIS="amd64 x86" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" multilib_abi="amd64 x86"
Comment 4 Thomas Sachau gentoo-dev 2011-10-09 15:35:57 UTC
gfortran -v:
Es werden eingebaute Spezifikationen verwendet.
Ziel: x86_64-pc-linux-gnu
Konfiguriert mit: /home/thomas/daten/portage/sys-devel/gcc-4.5.3-r1/work/gcc-4.5.3/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.3 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --without-ppl --without-cloog --disable-lto --enable-nls --without-included-gettext --with-system-zlib --disable-werror --enable-secureplt --enable-multilib --disable-libmudflap --disable-libssp --enable-esp --enable-libgomp --enable-cld --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/python --enable-checking=release --enable-languages=c,c++,java,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl= --with-pkgversion='Gentoo Hardened 4.5.3-r1 p1.0, pie-0.4.5'
Thread-Modell: posix
gcc-Version 4.5.3 (Gentoo Hardened 4.5.3-r1 p1.0, pie-0.4.5)
Comment 5 Justin Lecher (RETIRED) gentoo-dev 2011-10-10 05:54:19 UTC
okay super strange. py2.6 building is fine as it seems py2.7 as well. I don't get where it starts to suck. I cannot reproduce it here so I need the infomormation from you. Could you please give me the debug output from that emerge? And the content of F77 and FC. Could it be related to the hardened toolchain? I mean, that some auto detection things this doesn't work and falls back to ifort?
Comment 6 Justin Lecher (RETIRED) gentoo-dev 2012-12-07 08:25:52 UTC
Still completely unreproducable. Could you please test with latest ifc, numpy, etc? Please reopen if you can still see this error.