# emerge sync ....bunch of stuff.... >>> Updating Portage cache... ...done! Performing Global Updates: /usr/portage/profiles/updates/4Q-2003 (Could take a couple minutes if you have a lot of binary packages.) .='update pass' *='binary update' @='/var/db move' ......................!!! Cannot update binary: Destination exists. !!! sys-apps/genflags-0.94-r1 -> app-portage/genflags-0.94-r1 ....................................... ** Skipping packages. Run 'fixpackages' or set it in FEATURES to fix the tbz2's in the packages directory. Note: This can take a very long time. # emerge -V Portage 2.0.49-r15 (default-x86-1.4, gcc-3.2.3, glibc-2.3.2-r3, 2.4.20-xfs-r4) # ls /usr/portage/sys-apps/genflags ls: /usr/portage/sys-apps/genflags: No such file or directory # ls /usr/portage/app-portage/genflags ChangeLog files genflags-0.94.ebuild Manifest genflags-0.94-r1.ebuild metadata.xml # fixpackages Performing Global Updates: /usr/portage/profiles/updates/3Q-2002 (Could take a couple minutes if you have a lot of binary packages.) .='update pass' *='binary update' @='/var/db move' ...............................................................................$ Performing Global Updates: /usr/portage/profiles/updates/4Q-2002 (Could take a couple minutes if you have a lot of binary packages.) .='update pass' *='binary update' @='/var/db move' ...............................................................................$ Performing Global Updates: /usr/portage/profiles/updates/1Q-2003 (Could take a couple minutes if you have a lot of binary packages.) .='update pass' *='binary update' @='/var/db move' ...............................************************************************$ Performing Global Updates: /usr/portage/profiles/updates/2Q-2003 (Could take a couple minutes if you have a lot of binary packages.) .='update pass' *='binary update' @='/var/db move' ...............................................................................$ Performing Global Updates: /usr/portage/profiles/updates/3Q-2003 (Could take a couple minutes if you have a lot of binary packages.) .='update pass' *='binary update' @='/var/db move' ...............................................................................$ !!! sys-apps/raidtools-1.00.3-r1 -> sys-fs/raidtools-1.00.3-r1 ......!!! Cannot update binary: Destination exists. !!! app-admin/dosfstools-2.8-r3 -> sys-fs/dosfstools-2.8-r3 ..................*************************************************************$ Performing Global Updates: /usr/portage/profiles/updates/4Q-2003 (Could take a couple minutes if you have a lot of binary packages.) .='update pass' *='binary update' @='/var/db move' ......................!!! Cannot update binary: Destination exists. !!! sys-apps/genflags-0.94-r1 -> app-portage/genflags-0.94-r1 .......................................****************************************$ Done. If I manually remove the directories, then fixpackages and emerge sync are ok. If I then run emerge sync again, I run into the same problem. BTW, this is my first bug report, if there's anything missing or wrong, please let me know. Thanks
*** This bug has been marked as a duplicate of 26674 ***