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Bug 347780 - sci-libs/netcdf-4.1.1-r1 fails to make pdf
Summary: sci-libs/netcdf-4.1.1-r1 fails to make pdf
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Kacper Kowalik (Xarthisius) (RETIRED)
URL:
Whiteboard:
Keywords:
: 347847 (view as bug list)
Depends on:
Blocks:
 
Reported: 2010-12-05 07:49 UTC by Juergen Rose
Modified: 2010-12-06 21:53 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
/var/tmp/portage/sci-libs/netcdf-4.1.1-r1/temp/build.log (build.log,40.05 KB, text/plain)
2010-12-05 07:50 UTC, Juergen Rose
Details
proposal for a fixed ebuild (netcdf-4.1.1-r1.ebuild,2.08 KB, text/plain)
2010-12-05 11:23 UTC, Martin Walch
Details
/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/temp/build.log (build.log,30.94 KB, text/plain)
2010-12-06 06:04 UTC, Juergen Rose
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Juergen Rose 2010-12-05 07:49:54 UTC
'emerge netcdf' fails with:
;;;
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/netcdf-4.1.1-r1/work/netcdf-4.1.1 ...
make -j1 pdf 
make: *** No rule to make target `pdf'.  Stop.
emake failed
 * ERROR: sci-libs/netcdf-4.1.1-r1 failed:
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  56:  Called src_compile
 *   environment, line 3140:  Called die
 * The specific snippet of code:
 *           emake pdf || die;
 * 
 * If you need support, post the output of 'emerge --info =sci-libs/netcdf-4.1.1-r1',
 * the complete build log and the output of 'emerge -pqv =sci-libs/netcdf-4.1.1-r1'.
 * The complete build log is located at '/var/tmp/portage/sci-libs/netcdf-4.1.1-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/netcdf-4.1.1-r1/temp/environment'.
 * S: '/var/tmp/portage/sci-libs/netcdf-4.1.1-r1/work/netcdf-4.1.1'

>>> Failed to emerge sci-libs/netcdf-4.1.1-r1, Log file:

>>>  '/var/tmp/portage/sci-libs/netcdf-4.1.1-r1/temp/build.log'


Reproducible: Always




root@lynx:/root(21)# emerge --info =sci-libs/netcdf-4.1.1-r1
Portage 2.1.9.25 (default/linux/amd64/10.0/desktop, gcc-4.5.1, glibc-2.12.1-r3, 2.6.36-gentoo-r3 x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-2.6.36-gentoo-r3-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T8300_@_2.40GHz-with-gentoo-2.0.1
Timestamp of tree: Sun, 05 Dec 2010 05:30:01 +0000
app-shells/bash:     4.1_p9
dev-java/java-config: 2.1.11-r2
dev-lang/python:     2.7.1, 3.1.3
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1-r1
sys-apps/openrc:     0.6.7
sys-apps/sandbox:    2.4
sys-devel/autoconf:  2.13, 2.68
sys-devel/automake:  1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.4.5, 4.5.1-r1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.4-r1
sys-devel/make:      3.82
virtual/os-headers:  2.6.36.1 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula googleearth AdobeFlash-10.1 cadsoft"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ "
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/lordvan /var/lib/layman/x11 /var/lib/layman/java-overlay /var/lib/layman/sunrise /var/lib/layman/arcon /var/lib/layman/science /var/lib/layman/pro-audio /var/lib/layman/qting-edge /var/lib/layman/n4g /var/lib/layman/ibormuth /usr/local/portage /var/lib/cpan /var/lib/g-octave"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="64bit R X Xaw3d a52 aac abiword acl acpi admin afs alsa amd64 ao apache2 applet archive arpack asf aspell assistant audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 cairo cardbus cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli consolekit corba cracklib crypt css cuda cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds elf emacs emboss emf empathy encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fpx fts3 fuse galago garmin gd gdal gdbm gedit geoip geolocation geos gif gimp ginac git glade glib gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kdrive kerberos kpathsea kqemu kvm ladspa lame lapack laptop latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lua lzo mad mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric nvidia obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pae pam pango pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime readline reiserfs reports rle romio rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient smp sms sndfile snmp soup sox speex spell sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora thinkpad threads thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 video virtualbox vorbis wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" PHP_TARGETS="php5-2" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="nv nvidia nouveau vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS


root@lynx:/root(22)# emerge -pqv =sci-libs/netcdf-4.1.1-r1
[ebuild     U ] sci-libs/netcdf-4.1.1-r1 [4.1.1] USE="cxx doc fortran hdf5 szip -dap -static-libs"
Comment 1 Juergen Rose 2010-12-05 07:50:40 UTC
Created attachment 256369 [details]
/var/tmp/portage/sci-libs/netcdf-4.1.1-r1/temp/build.log
Comment 2 Martin Walch 2010-12-05 11:23:20 UTC
Created attachment 256374 [details]
proposal for a fixed ebuild

I can reproduce the problem here. I propose this ebuild to fix the problem.
Comment 3 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2010-12-05 11:39:17 UTC
+*netcdf-4.1.1-r2 (05 Dec 2010)
+
+  05 Dec 2010; Kacper Kowalik <xarthisius@gentoo.org> -netcdf-4.1.1-r1.ebuild,
+  +netcdf-4.1.1-r2.ebuild, files/netcdf-4.1.1-implicits.patch:
+  Properly use autotools-utils.eclass wrt #347780 by Juergen Rose
+  <rose@rz.uni-potsdam.de>. Skip configure phase for netcdf and libcf as we
+  don't build them. More implicits fixes. Drop old.
+
Comment 4 Juergen Rose 2010-12-06 06:01:02 UTC
sci-libs/netcdf-4.1.1-r2 fails for ne to emerge with:
...
TEXINPUTS="/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4:$TEXINPUTS" \
MAKEINFO='/bin/sh /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/missing --run makeinfo   -I /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4' \
texi2dvi -s  --pdf --batch /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.texi
egrep: Invalid range end
/usr/bin/texi2dvi: cannot read .//var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.texi, skipping.
make: *** [netcdf-c.pdf] Error 1
make: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/man4'
Comment 5 Juergen Rose 2010-12-06 06:02:40 UTC
root@lynx:/root(36)# emerge --info =sci-libs/netcdf-4.1.1-r2
Portage 2.1.9.25 (default/linux/amd64/10.0/desktop, gcc-4.5.1, glibc-2.12.1-r3, 2.6.36-gentoo-r3 x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-2.6.36-gentoo-r3-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T8300_@_2.40GHz-with-gentoo-2.0.1
Timestamp of tree: Mon, 06 Dec 2010 05:30:01 +0000
app-shells/bash:     4.1_p9
dev-java/java-config: 2.1.11-r2
dev-lang/python:     2.7.1, 3.1.3
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1-r1
sys-apps/openrc:     0.6.7
sys-apps/sandbox:    2.4
sys-devel/autoconf:  2.13, 2.68
sys-devel/automake:  1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.4.5, 4.5.1-r1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.4-r1
sys-devel/make:      3.82
virtual/os-headers:  2.6.36.1 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula googleearth AdobeFlash-10.1 cadsoft"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ "
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/lordvan /var/lib/layman/x11 /var/lib/layman/java-overlay /var/lib/layman/sunrise /var/lib/layman/arcon /var/lib/layman/science /var/lib/layman/pro-audio /var/lib/layman/qting-edge /var/lib/layman/n4g /var/lib/layman/ibormuth /usr/local/portage /var/lib/cpan /var/lib/g-octave"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="64bit R X Xaw3d a52 aac abiword acl acpi admin afs alsa amd64 ao apache2 applet archive arpack asf aspell assistant audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 cairo cardbus cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli consolekit corba cracklib crypt css cuda cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds elf emacs emboss emf empathy encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fpx fts3 fuse galago garmin gd gdal gdbm gedit geoip geolocation geos gif gimp ginac git glade glib gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kdrive kerberos kpathsea kqemu kvm ladspa lame lapack laptop latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lua lzo mad mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric nvidia obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pae pam pango pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime readline reiserfs reports rle romio rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient smp sms sndfile snmp soup sox speex spell sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora thinkpad threads thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 video virtualbox vorbis wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" PHP_TARGETS="php5-2" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="nv nvidia nouveau vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS


root@lynx:/root(37)# emerge -pqv =sci-libs/netcdf-4.1.1-r2
[ebuild     U ] sci-libs/netcdf-4.1.1-r2 [4.1.1] USE="cxx doc fortran hdf5 szip -dap -static-libs" 
Comment 6 Juergen Rose 2010-12-06 06:04:59 UTC
Created attachment 256474 [details]
/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/temp/build.log
Comment 7 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2010-12-06 08:05:43 UTC
(In reply to comment #4)

> texi2dvi -s  --pdf --batch
> /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.texi
> egrep: Invalid range end
> /usr/bin/texi2dvi: cannot read

Could you please check if it's a dupe of bug 311885 ? 
Comment 8 Juergen Rose 2010-12-06 10:38:05 UTC
After emerging texinfo-4.13-r1 as suggested in bug 311885 'emerge netcdf' fails now with:

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4 -I.. -I../fortran -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT nc4attr.lo -MD -MP -MF .deps/nc4attr.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4/nc4attr.c  -fPIC -DPIC -o .libs/nc4attr.o
In file included from /usr/include/H5public.h:57:0,
                 from /usr/include/hdf5.h:24,
                 from /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4/nc4internal.h:17,
                 from /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4/nc4attr.c:17:
/usr/include/mpi.h:221:37: error: expected identifier or '(' before 'int'
/usr/include/mpi.h:228:29: error: expected identifier or '(' before 'int'
make[2]: *** [nc4attr.lo] Error 1
make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/libsrc4'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build'
make: *** [all] Error 2
emake failed
 * ERROR: sci-libs/netcdf-4.1.1-r2 failed:


I suppose this is another issue and I will post a seperate bug.
Comment 9 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2010-12-06 11:58:28 UTC
*** Bug 347847 has been marked as a duplicate of this bug. ***
Comment 10 Martin von Gagern 2010-12-06 21:53:38 UTC
(In reply to bug #347847 comment #3)
> Please sync and try sci-libs/netcdf-4.1.1-r2. Problem should be fixed there.

The issue mentioned in comment #4 about "egrep: Invalid range end" isn't fixed in 4.1.1-r3. It's a manifestation of bug #311885 which hasn't been fixed yet. Possible workaround:

LC_ALL=C emerge -1 netcdf

You might consider doing something along these lines in the ebuild for now.