See attached build log.
(Please do not complain about the need for looking at the build log until you can provide an easy way to open bugs with the correct data picked out of a tinderbox log. Thanks.)
Created attachment 251505 [details]
+*phyml-2.4.5-r2 (22 Oct 2010)
+ 22 Oct 2010; Kacper Kowalik <firstname.lastname@example.org> phyml-2.4.5.ebuild,
+ -phyml-2.4.5-r1.ebuild, +phyml-2.4.5-r2.ebuild:
+ Respect LDFLAGS wrt bug 342089. Thanks to Diego for the report. Bump to
+ EAPI=2, add missing dies, drop empty depends. Drop old. Add missing quotes
+ to stable ebuild.