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Bug 308611 - sci-libs/lapack-reference-3.2.1-r1 fails to configure because of missing blas libraries
Summary: sci-libs/lapack-reference-3.2.1-r1 fails to configure because of missing blas...
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Library (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Gentoo Science Related Packages
Depends on: 308581
  Show dependency tree
Reported: 2010-03-09 09:31 UTC by Juergen Rose
Modified: 2014-05-18 07:07 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

/var/tmp/portage/sci-libs/lapack-reference-3.2.1-r1/work/lapack-3.2.1/config.log (config.log,100.32 KB, text/plain)
2010-03-09 09:35 UTC, Juergen Rose

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Description Juergen Rose 2010-03-09 09:31:39 UTC
'emerge world' fails with:
checking for sgemm_ in -lcomplib.sgimath... no
checking for sgemm_ in -lblas... (cached) no
checking for sgemm_ in -lblas... (cached) no
configure: error: Cannot find blas libraries

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sci-libs/lapack-reference-3.2.1-r1/work/lapack-3.2.1/config.log
 * ERROR: sci-libs/lapack-reference-3.2.1-r1 failed:
 *   econf failed

Reproducible: Always

root@condor:/root(98)# emerge --info =sci-libs/lapack-reference-3.2.1-r1
Portage (default/linux/amd64/10.0/desktop, gcc-4.4.3, glibc-2.11-r1, 2.6.32-gentoo-r3 x86_64)
                        System Settings
System uname: Linux-2.6.32-gentoo-r3-x86_64-Intel-R-_Core-TM-2_CPU_6600_@_2.40GHz-with-gentoo-2.0.1
Timestamp of tree: Tue, 09 Mar 2010 08:00:01 +0000
distcc 3.1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:     4.1_p2
dev-java/java-config: 2.1.10
dev-lang/python:     2.6.4-r1, 3.1.1-r1
dev-python/pycrypto: 2.1.0
dev-util/cmake:      2.8.0-r2
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.6.0-r1
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.65
sys-devel/automake:  1.4_p6, 1.7.9-r2, 1.8.5-r3, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1
sys-devel/gcc:       4.4.3
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.33
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula"
CFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch"
FFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
LINGUAS="de fr"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTDIR_OVERLAY="/var/lib/layman/dotnet /var/lib/layman/java-overlay /var/lib/layman/lordvan /var/lib/layman/perl-experimental /var/lib/layman/science /var/lib/layman/suka /var/lib/layman/x11 /var/lib/layman/zugaina /var/lib/layman/sunrise /usr/local/portage"
USE="64bit X Xaw3d a52 aac abiword acl acpi administrator afs alsa amd64 ao aotuv apache2 archive arpack asf aspell atlas audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli consolekit corba cracklib crypt cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 dts dv dvb dvd dvdr dvi eds elf emacs emboss empathy encode epiphany esd evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fts3 fuse galago garmin gd gdal gdbm geolocation geos gif gimp ginac git glade glib glitz gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kde kdrive kerberos kexi kpathsea kvm ladspa lame lapack latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lm_sensors lua lzo mad mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric nvidia obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pae pam pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python qhull qt3support qt4 quicktime readline reflection reiserfs rle romio rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient smp sndfile snmp soup sox speex spell spl sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora threads thunar thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit wmf wxwidgets x264 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" DVB_CARDS="tda10045 tda10046lifeview" ELIBC="glibc" INPUT_DEVICES="keyboard mouse                evdev               " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="nv nvidia nouveau vesa" 

root@condor:/root(99)# emerge -pqv =sci-libs/lapack-reference-3.2.1-r1
[ebuild     U ] sci-libs/lapack-reference-3.2.1-r1 [3.2.1] USE="doc -debug" 

root@condor:/root(100)# qlist -Iv blas
root@condor:/root(101)# eselect blas list
Installed BLAS for library directory lib64
  [1]   atlas
  [2]   atlas-threads *
root@condor:/root(102)# eselect cblas list
Installed CBLAS for library directory lib64
  [1]   atlas
  [2]   atlas-threads *
  [3]   gsl
root@condor:/root(103)# eselect lapack list
Installed LAPACK for library directory lib64
  [1]   atlas *
  [2]   reference

root@condor:/root(105)# ll /usr/lib/*blas*.so
lrwxrwxrwx 1 root root    30 Mar  8 02:15 /usr/lib/ -> blas/threaded-atlas/*
lrwxrwxrwx 1 root root    31 Mar  8 02:15 /usr/lib/ -> blas/threaded-atlas/*
lrwxrwxrwx 1 root root    20 Mar  8 02:49 /usr/lib/ ->*
-rwxr-xr-x 1 root root 18624 Feb 15 10:44 /usr/lib/*
lrwxrwxrwx 1 root root    27 Mar  3 12:52 /usr/lib/ ->*
Comment 1 Juergen Rose 2010-03-09 09:35:36 UTC
Created attachment 222793 [details]
Comment 2 Justin Lecher (RETIRED) gentoo-dev 2010-03-10 08:14:47 UTC
That version is masked because of this reason.
Comment 3 Pacho Ramos gentoo-dev 2014-05-18 07:07:45 UTC
looks solved now