During make, after quite some time, I get on AMD64 as well as i686 gcc -v 2>&1 >> bin/INSTALL_LOG/ERROR.LOG Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.4.2/work/gcc-4.4.2/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.4.2 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.2 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.2/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.2/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --without-ppl --without-cloog --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --enable-cld --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.4.2/python --enable-java-awt=gtk --enable-languages=c,c++,java,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.4.2 p1.0' Thread model: posix gcc version 4.4.2 (Gentoo 4.4.2 p1.0) gcc -V 2>&1 >> bin/INSTALL_LOG/ERROR.LOG gcc: '-V' option must have argument make[4]: [error_report] Error 1 (ignored) gcc --version 2>&1 >> bin/INSTALL_LOG/ERROR.LOG tar cf error_AMD64K10h64SSE3.tar Make.inc bin/INSTALL_LOG/* gzip --best error_AMD64K10h64SSE3.tar mv error_AMD64K10h64SSE3.tar.gz error_AMD64K10h64SSE3.tgz make[4]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.21/work/ATLAS/gentoo-build' make[3]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.21/work/ATLAS/gentoo-build' make[2]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.21/work/ATLAS/gentoo-build/bin' Error report error_<ARCH>.tgz has been created in your top-level ATLAS directory. Be sure to include this file in any help request. cat: ../../CONFIG/error.txt: No such file or directory cat: ../../CONFIG/error.txt: No such file or directory make[1]: *** [build] Error 255 Reproducible: Always
Hi Helmut, The error you posted is not actually the build failure but just the tail end of atlas' error log dumping routine (including the "gcc: '-V' option must have argument" bit). Could you please post your complete build log so I can see what the actual failure is. Thanks, Markus
I forgot: Please also post the respective emerge --info. Thanks, Markus
(In reply to comment #2) > I forgot: Please also post the respective emerge --info. Portage 2.2_rc61 (default/linux/amd64/10.0/desktop, gcc-4.4.2, glibc-2.11-r1, 2.6.32-gentoo-r2 x86_64) ================================================================= System uname: Linux-2.6.32-gentoo-r2-x86_64-AMD_Phenom-tm-_II_X4_955_Processor-with-gentoo-2.0.1 Timestamp of tree: Fri, 22 Jan 2010 10:45:02 +0000 ccache version 2.4 [disabled] app-shells/bash: 4.0_p37 dev-java/java-config: 1.3.7-r1, 2.1.10 dev-lang/python: 2.6.4 dev-python/pycrypto: 2.1.0 dev-util/ccache: 2.4-r8 dev-util/cmake: 2.8.0 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.6.0-r1 sys-apps/sandbox: 2.2 sys-devel/autoconf: 2.13, 2.65 sys-devel/automake: 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.3, 1.11.1 sys-devel/binutils: 2.20 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.30-r1 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-mtune=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-mtune=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests buildpkg distlocks fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unmerge-logs unmerge-orphans userfetch" GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo " LANG="en_US.iso88591" LDFLAGS="-Wl,-O1" LINGUAS="en de" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage /usr/local/portage/layman/java-overlay" SYNC="rsync://rsync.informatik.RWTH-Aachen.de/gentoo-portage" USE="3dnow 3dnowext 3dnowprefetch X a52 aac acl acpi alsa amd64 atm avahi berkdb branding bzip2 cairo cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr eds emboss encode evo fam ffmpeg fftw firefox flac fortran fuse gdbm gfortran gif gimp gnome gpm gstreamer gtk gtk2 hal iconv ipv6 jpeg kde lapack lcms libnotify mad mikmod mmx mmxext mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly ogg opengl openmp pam pcre pdf perl png ppds pppd python qt qt3support qt4 quicktime readline reflection sdl session smp spell spl sqlite sqlite3 sse sse2 sse3 sse4a ssl startup-notification svg sysfs tcl tcpd threads thunar tiff tk truetype unicode usb vorbis x264 xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en de" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="radeonhd" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
I confirm this bug on P4 celeron (prescott): xr1ksearch: /var/tmp/portage/sci-libs/blas-atlas-3.9.21/work/ATLAS/gentoo-build/ ..//tune/blas/ger/r1ksearch.c:331: SortRestricted: Assertion `r1B' failed. I will attach my build log and here is `emerge --info`: Portage 2.1.7.16 (default/linux/x86/10.0/desktop, gcc-4.4.2, glibc-2.11-r1, 2.6.32-gentoo-r2-n1 i686) ================================================================= System uname: Linux-2.6.32-gentoo-r2-n1-i686-Intel-R-_Celeron-R-_CPU_2.53GHz-with-gentoo-2.0.1 Timestamp of tree: Fri, 22 Jan 2010 12:00:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 4.0_p37 dev-lang/python: 2.6.4, 3.1.1-r1 dev-util/ccache: 2.4-r8 dev-util/cmake: 2.8.0 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.6.0-r1 sys-apps/sandbox: 2.2 sys-devel/autoconf: 2.13, 2.65 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.30-r1 ACCEPT_KEYWORDS="x86 ~x86" ACCEPT_LICENSE="* -@EULA Nero-EULA-US PUEL" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=native -O2 -floop-interchange -floop-strip-mine -floop-block -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -floop-interchange -floop-strip-mine -floop-block -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests ccache distlocks fixpackages news protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch" GENTOO_MIRRORS="http://mirror.yandex.ru/gentoo-distfiles/ http://mirror2.corbina.ru/gentoo-distfiles/ http://gentoo-mirror.spb.ru/" LANG="ru_RU.UTF-8" LC_ALL="" LDFLAGS="-Wl,--as-needed" LINGUAS="en ru" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/haskell /usr/local/own-portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa applet archive artworkextra bash-completion berkdb blas branding bzip2 cairo caps cblas cdda cddb cdr cli consolekit cracklib crypt cups curl cxx dbus dga dhcp dirac djvu doc dri dts dvd dvdr dvi eds emboss encode evo examples exif expat extras fam ffmpeg fftw firefox flac fontconfig fortran galago gdbm gif git glade glitz gmp gnome gnome-keyring gnutls gphoto2 gpm graphviz gs gstreamer gtk hal hdri hscolour iconv icu idn jadetex jpeg jpeg2k lame lapack lasi latex lcms libedit libnotify libsamplerate lua lzma mad matroska mikmod mmap mmx mng modplug modules mono mp3 mp4 mpeg mudflap musepack mysql nautilus ncurses nls nptl nptlonly ogg openexr opengl openmp openssl pam pcre pdf perl phonon plugins png policykit ppds pppd python qt3support qt4 quicktime raw readline reflection schroedinger scrobbler sdl session slang sndfile source spell spl sqlite sse sse2 ssl startup-notification subversion suid svg sysfs t1lib taglib tcl theora threads thumbnail thunar tiff tk tools truetype unicode usb utils v4l2 vorbis wavpack webkit win32codecs wmf wxwidgets x264 x86 xattr xcb xml xmp xorg xpm xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en ru" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 217181 [details] build log on P4 celeron
(In reply to comment #5) > Created an attachment (id=217181) [details] > build log on P4 celeron > Please attach build.logs in plain.
(In reply to comment #6) > Please attach build.logs in plain. It's about 7MB in size. Should I really do it?
(In reply to comment #6) > Please attach build.logs in plain. Sorry, bugzilla refuses to store this large file.
(In reply to comment #8) > (In reply to comment #6) > > Please attach build.logs in plain. > > Sorry, bugzilla refuses to store this large file. > That's all right - atlas logs can become a bit large at times ;) I'll have a look over the weekend. cheers, Markus
All right, I did have a peek at this and it looks like a genuine build problem triggered by a failed assertion in SortRestricted() during R1SUMM. This is really something upstream needs to have a look at. Hence please 1) Just to make sure, please try with MAKEOPTS="-j1" and just "-O2 -march=native" as CFLAGS/FFLAGS. 2) If this still fails please report this upstream. Please, make sure to read [1] first in order to provide a helpful error report that Clint can use for debugging. Please keep us in the loop so we know what is going on. Thanks a lot, Markus [1] http://math-atlas.sourceforge.net/faq.html#help
(In reply to comment #10) > All right, I did have a peek at this > and it looks like a genuine build problem > triggered by a failed assertion in SortRestricted() > during R1SUMM. This is really something upstream > needs to have a look at. Hence please > > 1) Just to make sure, please try with MAKEOPTS="-j1" and > just "-O2 -march=native" as CFLAGS/FFLAGS. > > 2) If this still fails please report this upstream. Please, > make sure to read [1] first in order to provide a > helpful error report that Clint can use for debugging. > > Please keep us in the loop so we know what is going on. > > Thanks a lot, > Markus > > > [1] http://math-atlas.sourceforge.net/faq.html#help > > I actually experienced what looks like the same failure to build. My emerge --info Portage 2.2_rc61 (default/linux/x86/10.0, gcc-4.4.2, glibc-2.10.1-r1, 2.6.32-gentoo-r1 i686) ================================================================= System uname: Linux-2.6.32-gentoo-r1-i686-AMD_Athlon-tm-_XP_2600+-with-gentoo-1.12.13 Timestamp of tree: Fri, 22 Jan 2010 20:45:02 +0000 ccache version 2.4 [enabled] app-shells/bash: 4.0_p35 dev-java/java-config: 1.3.7-r1, 2.1.10 dev-lang/python: 2.6.4-r1 dev-python/pycrypto: 2.0.1-r8 dev-util/ccache: 2.4-r7 dev-util/cmake: 2.6.4-r3 sys-apps/baselayout: 1.12.13 sys-apps/sandbox: 2.2 sys-devel/autoconf: 2.13, 2.63-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.20 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.27-r2 ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="* -@EULA" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=native -fomit-frame-pointer -pipe -fno-strict-aliasing" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -march=native -fomit-frame-pointer -pipe -fno-strict-aliasing" DISTDIR="/media/anthill/portage/distfiles" FEATURES="assume-digests ccache collision-protect distlocks fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch" GENTOO_MIRRORS="ftp://mirror.ihug.co.nz/gentoo http://mirrors.tds.net/gentoo http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo ftp://mirrors.tds.net/gentoo http://gentoo.eliteitminds.com" LANG="en_NZ.UTF-8" LDFLAGS="-Wl,--as-needed" LINGUAS="en_GB fr" MAKEOPTS="-j2 VERBOSE=1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/media/anthill" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/science /usr/local/portage/layman/sunrise /usr/local/portage/layman/kde /home/francois/Work/Overlays/Gentoo-sage" SYNC="rsync://rsync.au.gentoo.org/gentoo-portage" USE="3dnow 3dnowext X a52 aac aalib acl acpi alsa amr ao apm asf audiofile berkdb bidi bootsplash branding bzip2 cairo cdda cddb cdf cdparanoia cli composite consolekit cracklib crypt cups curl cxx dbus device-mapper dga dmi dri dts dv dvd dvdr dvdread encode exif expat ffmpeg fftw flac fontconfig foomaticdb fortran fpx gdbm geoip gif gimpprint glib glitz glut gmp graphviz gs gstreamer gtk gtk2 hal iconv id3tag idn imagemagick imlib imlib2 ipv6 ipython jack java jbig joystick jpeg jpeg2k kde kdehiddenvisibility kipi kpathsea ladspa lame lapack latex lcms libffi libsamplerate lzma lzo mad mathml matroska mikmod mime mmx mmx2 mmxext mng modules motif mp3 mp4 mpeg mplayer mudflap musicbrainz ncurses netcdf network nls nptl nptlonly ogg openal openexr opengl pcre pdf perl png policykit portaudio posix ppds pppd python qt3support qt4 quicktime readline reflection reiserfs sdl session sndfile sox spell spl sqlite3 sse ssl startup-notification svg svga sysfs szip t1lib tcl tcltk tcpd tetex tga theora thumbnail tiff tk truetype unicode usb v4l2 vcd vnc vorbis wavpack webkit wmf x264 x86 xanim xattr xcb xcomposite xine xinerama xml xorg xpm xsl xv xvid xvmc zlib" ALSA_CARDS="cmipci via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CAMERAS="canon ptp2" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en_GB fr" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="radeon" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ========= comparing with previous report it could be something to do with gcc or binutils. Will probably have to bug upstream in any case.
Please hold off reporting this upstream for now. I think I might know what the problem is but I need to test it first. cheers, Markus
All right, after re-activating a long decommissioned P4 box I was finally able to reproduce and track down this problem. As it turns out, the culprit was a pretty subtle bug in one of our libtoolized make rules. In case somebody has already filed a bug upstream please close and relay my sincerest apologies to them for the false alarm. I've just uploaded a modified shared libs patch. Please wait a few hours, resync and then try compiling again. Please make sure that you get the ebuild that pulls in version .1 of the patch, i.e. atlas-3.9.21-shared-libs.1.patch.bz2. Let me know how the updated version fares. Thanks, Markus
Installed without problems for me. Thanks Markus
Everything is fine now. Thank you!
(In reply to comment #15) > Everything is fine now. > Thank you! > Confirmed here, as well.
Great, thanks for testing and your patience. cheers, Marku
I assume, that I have the current ebuild: root@cheetah:/root(4)# grep shared-libs /usr/portage/sci-libs/blas-atlas/blas-atlas-3.9.21.ebuild mirror://gentoo/${MY_PN}-${PV}-shared-libs.1.patch.bz2" epatch "${DISTDIR}"/${MY_PN}-${PV}-shared-libs.1.patch.bz2 But 'emerge blas-atlas' still fails for me: root@cheetah:/root(5)# emerge -uvD blas-atlas ... make[3]: Entering directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.21/work/ATLAS/gentoo-build/tune/blas/ger' ./xr1ksearch -p c Read in L1 Cache size as = 128KB. make[3]: *** [res/cR1SUMM] Segmentation fault make[3]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.21/work/ATLAS/gentoo-build/tune/blas/ger' make[2]: *** [/var/tmp/portage/sci-libs/blas-atlas-3.9.21/work/ATLAS/gentoo-build/tune/blas/ger/res/cR1SUMM] Error 2 make[2]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.21/work/ATLAS/gentoo-build/bin' ERROR 955 DURING R1TUNE!!. CHECK INSTALL_LOG/cR1TUNE.LOG FOR DETAILS. ... cat: ../../CONFIG/error.txt: No such file or directory make[1]: *** [build] Error 255 make[1]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.21/work/ATLAS/gentoo-build' make: *** [build] Error 2 It looks like it is happened at all i686 computers.
root@tiger:/root(105)# emerge --info =sci-libs/blas-atlas-3.9.21 Portage 2.1.7.16 (default/linux/x86/10.0/desktop, gcc-4.4.2, glibc-2.11-r1, 2.6.31.1 i686) ================================================================= System Settings ================================================================= System uname: Linux-2.6.31.1-i686-Intel-R-_Pentium-R-_4_CPU_1.60GHz-with-gentoo-2.0.1 Timestamp of tree: Mon, 25 Jan 2010 06:00:01 +0000 distcc 3.1 i686-pc-linux-gnu [disabled] app-shells/bash: 4.0_p37 dev-java/java-config: 2.1.10 dev-lang/python: 2.6.4, 3.1.1-r1 dev-python/pycrypto: 2.1.0 dev-util/cmake: 2.8.0-r1 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.6.0-r1 sys-apps/sandbox: 2.2 sys-devel/autoconf: 2.13, 2.65 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r2, 1.8.5-r3, 1.9.6-r2, 1.10.3, 1.11.1 sys-devel/binutils: 2.20 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.30-r1 ACCEPT_KEYWORDS="x86 ~x86" ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=pentium4 -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=pentium4 -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch" FFLAGS="-O2 -march=pentium4 -fomit-frame-pointer" GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo ftp://ftp.uni-erlangen.de/pub/mirrors/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://ftp.join.uni-muenster.de/pub/linux/distributions/gentoo http://mirrors.sec.informatik.tu-darmstadt.de/gentoo/ http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ " LDFLAGS="-Wl,-O1" LINGUAS="de fr" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/zugaina /usr/local/portage/layman/science /usr/local/portage/layman/java-overlay /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X Xaw3d a52 aac acl acpi administrator afs alsa amrr ao aotuv apache2 asf aspell atlas audacious audiofile automount bash-completion beagle berkdb bjam blas bluetooth boo boost branding bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib crypt cups curl cxx daap dbus device-mapper dga dia djvu doc dri ds2490 dts dv dvb dvd dvdr dvi dxr3 eds elf emacs emboss encode epiphany esd evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fts3 fuse galago gd gdal gdbm geolocation geos gif gimp ginac git glade glib glitz gml gmp gnokii gnome gnome-keyring gnuplot gnutls gphoto2 gpm graphics graphtft graphviz gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hlapi http httpd iconv icq icu id3 ide imagemagick imap innodb ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kde kde4 kerberos kexi kpathsea ladspa lame lapack latex lcms ldap libffi libgda libnotify libsamplerate lirc lm_sensors lua lzo mad mail maildir mailwrapper math matroska mikmod mmx mmxext mng modules mono motif mozdevelop mozilla mp3 mp4 mpeg mplayer mtp mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp pam pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python qhull qt3support qt4 quicktime readline reflection reiserfs rle rpc rrdcgi rrdtool samba sasl science sdl server session slang slp smbclient smp sndfile snmp soup sox speex spell spl sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora threads thunar thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit win32codecs wmf wxwidgets x264 x86 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="ide websvccommon nb harness apisupport groovy gsf j2ee java xml" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="mga vesa via openchrome" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS root@tiger:/root(106)# emerge -pqv =sci-libs/blas-atlas-3.9.21 [ebuild U ] sci-libs/blas-atlas-3.9.21 [3.9.3] USE="doc -debug"
Created attachment 217392 [details] /var/tmp/portage/sci-libs/blas-atlas-3.9.21/temp/build.log
