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Bug 298794 - Stabilize dev-python/cython-0.12
Summary: Stabilize dev-python/cython-0.12
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: High enhancement (vote)
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords: STABLEREQ
Depends on: 301638
Blocks:
  Show dependency tree
 
Reported: 2009-12-28 22:05 UTC by Arfrever Frehtes Taifersar Arahesis (RETIRED)
Modified: 2010-03-07 12:52 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
ppc64 failure (ppc64-64UL-cython.log,181.84 KB, text/plain)
2010-01-15 16:13 UTC, Brent Baude (RETIRED)
Details

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Description Arfrever Frehtes Taifersar Arahesis (RETIRED) gentoo-dev 2009-12-28 22:05:08 UTC
Stabilize dev-python/cython-0.12.
Comment 1 Thomas Kahle (RETIRED) gentoo-dev 2010-01-03 15:40:25 UTC
Good conduct on x86

# emerge --info               
Portage 2.1.6.13 (default/linux/x86/10.0/desktop, gcc-4.3.4, glibc-2.9_p20081201-r2, 2.6.32.2 i686)
=================================================================                                  
System uname: Linux-2.6.32.2-i686-Intel-R-_Core-TM-2_Duo_CPU_L7500_@_1.60GHz-with-gentoo-1.12.13   
Timestamp of tree: Sun, 03 Jan 2010 12:15:01 +0000                                                 
ccache version 2.4 [enabled]                                                                       
app-shells/bash:     4.0_p35                                                                       
dev-lang/python:     2.4.6, 2.6.4                                                                  
dev-util/ccache:     2.4-r7                                                                        
dev-util/cmake:      2.6.4-r3                                                                      
sys-apps/baselayout: 1.12.13                                                                       
sys-apps/sandbox:    1.6-r2                                                                        
sys-devel/autoconf:  2.13, 2.63-r1                                                                 
sys-devel/automake:  1.9.6-r2, 1.10.2                                                              
sys-devel/binutils:  2.18-r3                                                                       
sys-devel/gcc-config: 1.4.1                                                                        
sys-devel/libtool:   2.2.6b                                                                        
virtual/os-headers:  2.6.27-r2                                                                     
ACCEPT_KEYWORDS="x86"                                                                              
CBUILD="i686-pc-linux-gnu"                                                                         
CFLAGS="-march=core2 -O2 -pipe"                                                                    
CHOST="i686-pc-linux-gnu"                                                                          
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config"                                         
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"               
CXXFLAGS="-march=core2 -O2 -pipe"                                                                                                  
DISTDIR="/usr/portage/distfiles"                                                                                                   
FEATURES="ccache collision-protect distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alsa berkdb bluetooth branding bzip2 cairo cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr eds emboss encode evo fam firefox flac fortran gdbm gif gnome gpm gstreamer gtk hal iconv ipv6 jpeg kde ldap libnotify mad mikmod mng modules mp3 mp4 mpeg mudflap ncurses nls nptl nptlonly ogg opengl openmp pam pcre pdf perl png ppds pppd python qt qt3support qt4 quicktime readline reflection sdl session spell spl ssl startup-notification svg sysfs tcpd thunar tiff tk truetype unicode usb vorbis win32codecs x264 x86 xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nv r128 radeon savage sis tdfx trident vesa via vmware voodoo"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Comment 2 Christian Faulhammer (RETIRED) gentoo-dev 2010-01-03 21:38:13 UTC
x86 stable, thanks Thomas
Comment 3 Jeroen Roovers (RETIRED) gentoo-dev 2010-01-05 18:09:14 UTC
Stable for HPPA.
Comment 4 Brent Baude (RETIRED) gentoo-dev 2010-01-10 17:28:00 UTC
On ppc64 I am getting a segfault error.  Anyone seeing this kind of business?

compiling (c) and running bufaccess ... Exception Exception: Exception() in 'bufaccess.MockBuffer.create_buffer' ignored
Doctest: bufaccess.__test__.acquire_failure1 ... Exception Exception: Exception() in 'bufaccess.MockBuffer.create_buffer' ignored
/var/tmp/portage/dev-python/cython-0.12/temp/environment: line 3766:  4665 Segmentation fault      "$(PYTHON)" runtests.py --no-fork -vv
 * 
 * ERROR: dev-python/cython-0.12 failed.
Comment 5 Arfrever Frehtes Taifersar Arahesis (RETIRED) gentoo-dev 2010-01-10 17:32:07 UTC
(In reply to comment #4)

You probably use unstable GCC 4.4 (bug #294585).
Comment 6 nixnut (RETIRED) gentoo-dev 2010-01-10 18:58:30 UTC
ppc stable
Comment 7 Brent Baude (RETIRED) gentoo-dev 2010-01-15 16:12:36 UTC
I am using gcc-4.3.4.  If I change to -O0, the segfault does go away but then I get test failures, primarily with doctest stuff.  I will post the -O0 build log

emerge --info as follows:

quad cython # emerge --info
Portage 2.1.6.13 (default/linux/powerpc/ppc64/10.0/64bit-userland/desktop, gcc-4.3.4, glibc-2.9_p20081201-r2, 2.6.31-gentoo-r6-g5-64 ppc64)
=================================================================
System uname: Linux-2.6.31-gentoo-r6-g5-64-ppc64-PPC970MP,_altivec_supported-with-gentoo-1.12.11.1
Timestamp of tree: Fri, 15 Jan 2010 15:00:17 +0000
app-shells/bash:     4.0_p35
dev-java/java-config: 2.1.9-r1
dev-lang/python:     2.5.4-r3, 2.6.2-r1
dev-util/cmake:      2.6.4-r3
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox:    1.6-r2
sys-devel/autoconf:  2.13, 2.63-r1
sys-devel/automake:  1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2
sys-devel/binutils:  2.19.1-r1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.27-r2
ACCEPT_KEYWORDS="ppc64"
CBUILD="powerpc64-unknown-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="powerpc64-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config /var/bind"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoaddcvs cvs distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch"
GENTOO_MIRRORS="http://quad/ http://gentoo.mirrors.tds.net/gentoo"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j6"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://sharpie/gentoo-portage"
USE="X a52 aac acl alsa berkdb bluetooth branding bzip2 cairo cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr eds emboss encode evo fam firefox flac fortran gdbm gif gnome gpm gstreamer gtk hal ibm iconv ipv6 jpeg kde ldap libnotify mad mikmod mng modules mp3 mp4 mpeg mudflap ncurses nls nptl nptlonly ogg opengl openmp pam pcre pdf perl png ppc64 ppds pppd python qt3support qt4 quicktime readline reflection sdl session spell spl ssl startup-notification svg sysfs tcpd thunar tiff truetype unicode usb vorbis x264 xml xorg xulrunner xv xvid zlib" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev mach64 mga nv r128 radeon vesa"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 8 Brent Baude (RETIRED) gentoo-dev 2010-01-15 16:13:22 UTC
Created attachment 216611 [details]
ppc64 failure
Comment 9 Vítor Brandão (noisebleed) 2010-01-24 23:26:58 UTC
AMD64 Arch Tester Report

Compile/Installs: OK
Functionality: Tested cython command with "cython --annotate --verbose primes.pyx". Looks OK in both emerge variants.

Emerge (USE) variants:
1) USE="" emerge =dev-python/cython-0.12 (USE="-doc -examples")
2) USE="doc examples" emerge =dev-python/cython-0.12 (USE="doc examples")

Emerge --info:
Portage 2.1.6.13 (default/linux/amd64/10.0, gcc-4.3.4, glibc-2.10.1-r1, 2.6.29-tuxonice-r4 x86_64)
=================================================================
System uname: Linux-2.6.29-tuxonice-r4-x86_64-Intel-R-_Core-TM-2_CPU_T5500_@_1.66GHz-with-gentoo-1.12.13
Timestamp of tree: Sat, 23 Jan 2010 18:15:01 +0000
app-shells/bash:     4.0_p35
dev-lang/python:     2.6.4
sys-apps/baselayout: 1.12.13
sys-apps/sandbox:    1.6-r2
sys-devel/autoconf:  2.13, 2.63-r1
sys-devel/automake:  1.7.9-r1, 1.9.6-r2, 1.10.2
sys-devel/binutils:  2.18-r3
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.27-r2
ACCEPT_KEYWORDS="amd64"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/redmine/config"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-march=core2 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="collision-protect distlocks fixpackages multilib-strict parallel-fetch protect-owned sandbox sfperms strict test unmerge-orphans userfetch"
GENTOO_MIRRORS="http://darkstar.ist.utl.pt/gentoo/ ftp://distro.ibiblio.org/pub/linux/distributions/gentoo/ http://ftp.udc.es/gentoo/ "
LANG="pt_PT.UTF-8"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="acl amd64 berkdb bzip2 cli cracklib crypt cups cxx dri fortran gdbm gpm iconv ipv6 mmx modules mudflap multilib ncurses nls nptl nptlonly openmp pam pcre perl pppd python readline reflection session spl sse sse2 ssl sysfs tcl tcpd test unicode xorg zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" APACHE2_MPMS="prefork" ELIBC="glibc" INPUT_DEVICES="keyboard mouse synaptics evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia nv vesa fbdev"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY

Comment 10 Markos Chandras (RETIRED) gentoo-dev 2010-02-01 16:34:23 UTC
Stable on amd64
Comment 11 Arfrever Frehtes Taifersar Arahesis (RETIRED) gentoo-dev 2010-03-07 12:52:56 UTC
dev-python/cython-0.12.1 will be stabilized in bug #308207.