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Bug 277028 - sci-visualization/hippodraw fails to configure
Summary: sci-visualization/hippodraw fails to configure
Status: RESOLVED WORKSFORME
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2009-07-08 12:19 UTC by Diego Elio Pettenò (RETIRED)
Modified: 2010-06-24 18:18 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
Build log (hippodraw-1.21.3-r1:20090708-120458.log,11.55 KB, text/plain)
2009-07-08 12:20 UTC, Diego Elio Pettenò (RETIRED)
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Diego Elio Pettenò (RETIRED) gentoo-dev 2009-07-08 12:19:34 UTC
Portage 2.1.6.13 (!../var/cache/portage/tree/profiles/default/linux/x86/2008.0, gcc-4.4.0-asneeded, glibc-2.10.1-r0, 2.6.30-gentoo-r1 i686)
=================================================================
System uname: Linux-2.6.30-gentoo-r1-i686-Quad-Core_AMD_Opteron-tm-_Processor_2350-with-gentoo-2.0.1
Timestamp of tree: Wed, 08 Jul 2009 10:00:01 +0000
ccache version 2.4 [enabled]
app-shells/bash:     4.0_p24
dev-java/java-config: 1.3.7-r1, 2.1.8-r1
dev-lang/python:     2.6.2-r1
dev-python/pycrypto: 2.0.1-r8
dev-util/ccache:     2.4-r8
dev-util/cmake:      2.6.4
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.4.3-r3
sys-apps/sandbox:    2.0
sys-devel/autoconf:  2.13, 2.63-r1
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2, 1.11
sys-devel/binutils:  2.19.1-r1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6a
virtual/os-headers:  2.6.30
ACCEPT_KEYWORDS="x86 ~x86"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /opt/glftpd/etc /opt/glftpd/ftp-data /opt/openfire/resources/security/ /opt/openjms/config /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/bufrtables /usr/share/config /var/bind /var/lib/hsqldb /var/phxd /var/spool/torque /var/vpopmail/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/distfiles"
FEATURES="ccache distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict test test-fail-continue unmerge-orphans userfetch"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo"
INSTALL_MASK="  /usr/share/doc  /usr/share/man  /usr/share/info"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j14"
PKGDIR="/var/spool/portage/packages"
PORTAGE_COMPRESS=""
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/var/cache/portage/tree-tinderbox"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="acl berkdb bzip2 cli cracklib crypt cups dri fortran gdbm gpm iconv ipv6 isdnlog java5 java6 midi mudflap ncurses nls nostatic nptl nptlonly openmp pam pcre perl pppd python qt3support readline reflection ruby session spl ssl sysfs tcpd unicode x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, LANG, LC_ALL, LINGUAS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Comment 1 Diego Elio Pettenò (RETIRED) gentoo-dev 2009-07-08 12:20:50 UTC
Created attachment 197172 [details]
Build log
Comment 2 David Kredba 2009-08-04 18:15:57 UTC
I have something completely different (not linked openmp library?):

-cut-

Python found
    PY_INCLUDE = /usr/include/python2.6
    PY_LIB     = /usr/lib64/python2.6  
configure: checking boost installation with
    BOOST_CXXFLAGS=-I/usr/local/include/boost-1_33_1 
checking for /usr/local/include/boost-1_33_1/boost/python.hpp... no
configure: checking boost installation with                        
    BOOST_CXXFLAGS=                                                
checking for /usr/include/boost/python.hpp... yes                  
configure: checking boost installation with                        
    BOOST_LDFLAGS=-L/usr/local/lib -lboost_python-gcc-1_33_1 -R/usr/local/lib 
checking for /usr/local/lib/libboost_python-gcc-1_33_1.so... no               
configure: checking boost installation with                                   
    BOOST_LDFLAGS=-lboost_python                                              
checking for main in -lboost_python... yes                                    
configure: Minuit2 disabled                                                   
configure: WARNING: Minuit2 not found                                         
configure: checking Minuit install with                                       
    MINUIT_CXXFLAGS=-I/usr/local/include                                      
    MINUIT_LDFLAGS=-L/usr/local/lib -llcg_Minuit -R/usr/local/lib             
checking for /usr/local/include/Minuit/FCNBase.h... no                        
checking for /usr/local/lib/liblcg_Minuit.so... no                            
configure: WARNING: Minuit not found                                          
configure: checking ROOT install with                                         
    ROOT_CXXFLAGS=-I/usr/include/root                                         
    ROOT_LDFLAGS=-L/usr/lib64/root -lCore -lCint -lTree -lMatrix -lHist -R /usr/lib64/root  
checking for /usr/include/root/TTree.h... yes                                               
checking for /usr/lib64/root/libCore.so... yes                                              
checking for /usr/include/root/Minuit2/FCNBase.h... yes                                     
checking for /usr/lib64/root/libMinuit2.so... yes                                           
checking for /usr/lib64/python2.6/site-packages/numpy/core/include/numpy/arrayobject.h... yes
Numpy found                                                                                  
checking for Qt... User disabled Qt.                                                         
./configure: line 17698: test: too many arguments                                            
configure: checking QT4 install                                                              
checking for /usr/include/qt4/QtGui/QAbstractButton... yes                                   
checking for /usr/lib64/qt4/libQtCore.so... yes                                              
./configure: line 17859: test: too many arguments                                            
configure: checking WCSLIB install with                                                      
    WCSLIB_CXXFLAGS=-Ino                                                                     
    WCSLIB_LDFLAGS=                                                                          
checking for no/wcslib/wcs.h... no                                                           
checking for wcsset in -lwcs... yes                                                          
configure: WARNING: WCSLIB not found                                                         
configure: checking cfitsio install with                                                     
      CFITSIO_CXXFLAGS=-I/usr/include                                                        
      CFITSIO_LDFLAGS=-L/usr/lib64 -lcfitsio -R /usr/lib64                                   
checking for /usr/include/fitsio.h... yes                                                    
checking for /usr/lib64/libcfitsio.so... yes                                                 
checking sstream usability... yes                                                            
checking sstream presence... yes                                                             
checking for sstream... yes                                                                  
checking whether the compiler can use std::distance()... yes                                 
checking whether the compiler can use std::string::clear... (cached) yes                     
checking whether the compiler can use mem_fun(arg)... yes                                    
configure: creating ./config.status                                                          
config.status: creating Makefile


-cut-

...

-cut-

make[4]: Leaving directory `/var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/qt'                                                        
Making all in app                                                                                                                                                   
make[4]: Entering directory `/var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/qt/app'                                                   
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -DQT_THREAD_SUPPORT  -I. -I../.. -I../.. -I/usr/include/qt4 -I/usr/include/qt4/Qt -DQT_COMPAT -DQT3_SUPPORT    -O2 -g -ggdb -pipe -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cxx                                                                                                   
mv -f .deps/main.Tpo .deps/main.Po                                                                                                                                  
/bin/sh ../../libtool --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++  -O2 -g -ggdb -pipe -L/usr/lib64 -lcfitsio -R /usr/lib64  -L/usr/lib64/root -lMinuit2 -lGraf -R/usr/lib64/root -L/usr/lib64/root -lCore -lCint -lTree -lMatrix -lHist -R /usr/lib64/root -u _G__cpp_setup_initializerG__Tree  -Wl,-O1 -o hippodraw main.o ../../qt/libhippoqt.la ../../lib/libhippo.la                                                                                                                                
libtool: link: x86_64-pc-linux-gnu-g++ -O2 -g -ggdb -pipe -u _G__cpp_setup_initializerG__Tree -Wl,-O1 -o .libs/hippodraw main.o  -L/usr/lib64 -L/usr/lib64/root ../../qt/.libs/libhippoqt.so -L/usr/lib64/qt4 -L/usr/X11R6/lib -L/usr/lib64/mysql -L/usr/lib /usr/lib64/qt4/libQt3Support.so /usr/lib64/qt4/libQtSql.so /usr/lib64/qt4/libQtXml.so /usr/lib64/qt4/libQtGui.so -laudio /usr/lib64/libXt.so /usr/lib64/libpng12.so /usr/lib64/libgobject-2.0.so /usr/lib64/libSM.so -luuid /usr/lib64/libICE.so /usr/lib64/libXrandr.so /usr/lib64/libXrender.so /usr/lib64/libXinerama.so /usr/lib64/libfontconfig.so /usr/lib64/libfreetype.so /usr/lib64/libexpat.so /usr/lib64/libXext.so /usr/lib64/libX11.so /usr/lib64/libXau.so /usr/lib64/libXdmcp.so /usr/lib64/qt4/libQtNetwork.so /usr/lib64/qt4/libQtCore.so -lz /usr/lib64/libgthread-2.0.so -lrt /usr/lib64/libglib-2.0.so -lpthread -ldl -lQtAssistantClient /var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/lib/.libs/libhippo.so ../../lib/.libs/libhippo.so -lMinuit2 -lGraf /usr/lib64/libcfitsio.so -lm -lCore -lCint -lTree -lMatrix -lHist -pthread -Wl,-rpath -Wl,/usr/lib64 -Wl,-rpath -Wl,/usr/lib64/root                                                                                                                                                  
/usr/lib64/root/libMinuit2.so: undefined reference to `GOMP_parallel_start'                                                                                         
/usr/lib64/root/libMinuit2.so: undefined reference to `omp_get_thread_num'                                                                                          
/usr/lib64/root/libMinuit2.so: undefined reference to `GOMP_parallel_end'                                                                                           
/usr/lib64/root/libMinuit2.so: undefined reference to `omp_get_num_threads'                                                                                         
/usr/lib64/root/libMinuit2.so: undefined reference to `ROOT::Minuit2::Numerical2PGradientCalculator::operator()(std::vector<double, std::allocator<double> > const&) const'                                                                                                                                                             
collect2: ld returned 1 exit status                                                                                                                                 
make[4]: *** [hippodraw] Error 1                                                                                                                                    
make[4]: Leaving directory `/var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/qt/app'                                                    
make[3]: *** [all-recursive] Error 1


objdump -T /usr/lib64/root/libMinuit2.so |grep GOMP_parallel
0000000000000000      D  *UND*  0000000000000000              GOMP_parallel_start
0000000000000000      D  *UND*  0000000000000000              GOMP_parallel_end

other symbols "*UND*" as well.


I have both qt-3.3.8b and 4.5.2 installed.


Maybe the openmp library is not asked at linking time?


Portage 2.1.6.13 (default/linux/amd64/2008.0/desktop, gcc-4.3.3, glibc-2.10.1-r0, 2.6.30-gentoo-r4-4d x86_64)
=================================================================                                            
System uname: Linux-2.6.30-gentoo-r4-4d-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q9300_@_2.50GHz-with-gentoo-2.0.1 
Timestamp of tree: Tue, 04 Aug 2009 14:30:01 +0000                                                           
app-shells/bash:     4.0_p28                                                                                 
dev-java/java-config: 2.1.8-r1                                                                               
dev-lang/python:     2.6.2-r1, 3.1                                                                           
dev-util/cmake:      2.6.4-r2                                                                                
sys-apps/baselayout: 2.0.1                                                                                   
sys-apps/openrc:     0.4.3-r3                                                                                
sys-apps/sandbox:    2.0                                                                                     
sys-devel/autoconf:  2.13, 2.63-r1                                                                           
sys-devel/automake:  1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2, 1.11                                              
sys-devel/binutils:  2.19.1-r1                                                                               
sys-devel/gcc-config: 1.4.1                                                                                  
sys-devel/libtool:   2.2.6a                                                                                  
virtual/os-headers:  2.6.30-r1                                                                               
ACCEPT_KEYWORDS="amd64 ~amd64"                                                                               
CBUILD="x86_64-pc-linux-gnu"                                                                                 
CFLAGS="-O2 -g -ggdb -pipe"                                                                                  
CHOST="x86_64-pc-linux-gnu"                                                                                  
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/bind /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"                                                                                                                  
CXXFLAGS="-O2 -g -ggdb -pipe"                                                                                                                                       
DISTDIR="/usr/portage/distfiles"                                                                                                                                    
FEATURES="distlocks fixpackages nostrip parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch"
GENTOO_MIRRORS="ftp://gentoo.inode.at/source/ ftp://ftp.fi.muni.cz/pub/linux/gentoo/ ftp://gentoo.mirror.web4u.cz/ "
LANG="cs_CZ.UTF-8"
LC_ALL="cs_CZ.UTF-8"
LDFLAGS="-Wl,-O1"
LINGUAS="cs en"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_COMPRESS="echo"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X accessibility acl acpi alsa amd64 arts avahi berkdb bluetooth branding bzip2 cairo cdr cli cracklib crypt cups dbus directfb djvu doc dri dvd dvdr dvdread eds emacs emboss encode epydoc esd evo examples exif fam firefox fontconfig fortran freetds gcj gd gdbm gedit geoip gif gimp glep gmp gnome gnome-keyring gpm gstreamer gtk guile hal htmlhandbook iconv idn ieee1394 isdnlog ithreads jadetex java jpeg jpeg2k kde kdehiddenvisibility kerberos lapack latex lcms ldap libedit libffi libnotify lzma lzo mad mikmod mmx mono mp3 mpeg mudflap multilib mysql nautilus ncurses nls nptl nptlonly objc objc++ objc-gc odbc ogg opengl openmp pam pch pcre pdf perl png portaudio ppds pppd pulseaudio python qt3 qt3support qt4 quicktime readline reflection ruby samba sasl sdl session slang soundex source spell spl sqlite sse sse2 sse3 ssl startup-notification svg sysfs tcl tcpd threads tiff tk truetype unicode usb v4l v4l2 vorbis wmf xinerama xml xorg xpm xulrunner xv zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="cs en" LIRC_DEVICES="inputlirc" USERLAND="GNU" VIDEO_CARDS="nvidia nv vesa v4l"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY

Thank you.
Comment 3 Markus Dittrich (RETIRED) gentoo-dev 2009-12-15 23:39:03 UTC
(In reply to comment #1)
> Created an attachment (id=197172) [details]
> Build log


Unfortunately, I can't reproduce this on either x86
or amd64. The error message in the log indicates
that compilation of a fairly simple qt program fails
somehow. Is there anything more instructive in config.log
by any chance that would give some indication of what
actually fails.

Thanks,
Markus
Comment 4 David Kredba 2009-12-16 14:24:44 UTC
My compilation fails with:

make[4]: Leaving directory `/var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/qt'
Making all in app
make[4]: Entering directory `/var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/qt/app'
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -DQT_THREAD_SUPPORT  -I. -I../.. -I../.. -I/usr/include/qt4 -I/usr/include/qt4/Qt -DQT_COMPAT -DQT3_SUPPORT    -O2 -g -ggdb -pipe -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cxx
mv -f .deps/main.Tpo .deps/main.Po
/bin/sh ../../libtool --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++  -O2 -g -ggdb -pipe -L/usr/lib64 -lcfitsio -R /usr/lib64  -L/usr/lib64/root -lMinuit2 -lGraf -R/usr/lib64/root -L/usr/lib64/root -lCore -lCint -lTree -lMatrix -lHist -R /usr/lib64/root -u _G__cpp_setup_initializerG__Tree  -Wl,-O1 -o hippodraw main.o ../../qt/libhippoqt.la ../../lib/libhippo.la
libtool: link: x86_64-pc-linux-gnu-g++ -O2 -g -ggdb -pipe -u _G__cpp_setup_initializerG__Tree -Wl,-O1 -o .libs/hippodraw main.o  -L/usr/lib64 -L/usr/lib64/root ../../qt/.libs/libhippoqt.so -L/usr/lib64/qt4 -L/usr/X11R6/lib -L/usr/lib64/mysql /usr/lib64/qt4/libQt3Support.so /usr/lib64/qt4/libQtSql.so /usr/lib64/qt4/libQtXml.so /usr/lib64/qt4/libQtGui.so /usr/lib64/qt4/libQtNetwork.so /usr/lib64/qt4/libQtCore.so -lpthread /var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/lib/.libs/libhippo.so ../../lib/.libs/libhippo.so -lMinuit2 -lGraf /usr/lib64/libcfitsio.so -lm -lCore -lCint -lTree -lMatrix -lHist -lwcs -Wl,-rpath -Wl,/usr/lib64 -Wl,-rpath -Wl,/usr/lib64/root
/var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/lib/.libs/libhippo.so: undefined reference to `ROOT::Minuit2::ModularFunctionMinimizer::Minimize(ROOT::Minuit2::FCNBase const&, std::vector<double, std::allocator<double> > const&, unsigned int, std::vector<double, std::allocator<double> > const&, unsigned int, unsigned int, double) const'
/var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/lib/.libs/libhippo.so: undefined reference to `ROOT::Minuit2::ModularFunctionMinimizer::Minimize(ROOT::Minuit2::FCNGradientBase const&, std::vector<double, std::allocator<double> > const&, unsigned int, std::vector<double, std::allocator<double> > const&, unsigned int, unsigned int, double) const'
/var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/lib/.libs/libhippo.so: undefined reference to `ROOT::Minuit2::ModularFunctionMinimizer::Minimize(ROOT::Minuit2::FCNBase const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, unsigned int, unsigned int, double) const'
/var/tmp/portage/sci-visualization/hippodraw-1.21.3-r1/work/HippoDraw-1.21.3/lib/.libs/libhippo.so: undefined reference to `ROOT::Minuit2::ModularFunctionMinimizer::Minimize(ROOT::Minuit2::FCNGradientBase const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, unsigned int, unsigned int, double) const'
collect2: ld returned 1 exit status

Info:
CPV:  sci-visualization/hippodraw- 1.21.3-r1                                                                                                                                                                                                                          
 * USE:  amd64 elibc_glibc examples fits kernel_linux multilib numpy qt4 root userland_GNU wcs

Portage 2.1.7.14 (default/linux/amd64/10.0/desktop, gcc-4.4.2, glibc-2.11-r1, 2.6.32-gentoo-1d x86_64)
=================================================================
System uname: Linux-2.6.32-gentoo-1d-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q9300_@_2.50GHz-with-gentoo-2.0.1
Timestamp of tree: Wed, 16 Dec 2009 14:00:01 +0000
app-shells/bash:     4.0_p35
dev-java/java-config: 2.1.10
dev-lang/python:     2.6.4
dev-util/cmake:      2.8.0
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.5.3
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.64
sys-devel/automake:  1.4_p6, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.3, 1.11.1
sys-devel/binutils:  2.20
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.30-r1
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -g -ggdb -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/bind /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -g -ggdb -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests distlocks fixpackages news nostrip parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -g -ggdb -pipe"
GENTOO_MIRRORS="ftp://gentoo.inode.at/source/ ftp://gentoo.mirror.web4u.cz/ "
LDFLAGS="-Wl,-O1"
LINGUAS="cs en"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_COMPRESS="echo"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo caps cdr cli consolekit cracklib crypt cups cxx dbus djvu dri dts dvd dvdr eds emboss encode evo examples exif extras fam firefox flac fontconfig fontforge fortran gdbm gif gmp gnome gpm gstreamer gtk hal iconv idn ithreads java jpeg jpeg2k kde kerberos lcms ldap libedit libnotify mad mikmod mmx modules mp3 mp4 mpeg mudflap multilib mysql ncurses nls nptl nptlonly objc objc++ objc-gc odbc ogg openexr opengl openmp pam pch pcre pdf perl png policykit ppds pppd python qt3support qt4 quicktime readline reflection samba sdl session slang spell spl sqlite sse sse2 sse3 ssl startup-notification svg sysfs tcl tcpd threads thunar tiff tk truetype unicode usb utils vorbis x264 xattr xcb xinerama xml xorg xpm xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="cs en" LIRC_DEVICES="inputlirc" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia nv vesa v4l"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Comment 5 Markus Dittrich (RETIRED) gentoo-dev 2009-12-17 23:36:47 UTC
(In reply to comment #4)
> My compilation fails with:
> 

David,

Could you please file a separate bug since yours has nothing
to do with the problem that Diego reported! Otherwise things
will become confusing.

Thanks,
Markus
Comment 6 Justin Lecher (RETIRED) gentoo-dev 2010-06-24 18:18:10 UTC
I cannot reproduce that. Please reopen if still exists.