'emerge -uvD gpsbabel' fails with: ... Writing /var/tmp/portage/sci-geosciences/gpsbabel-1.3.6/work/gpsbabel-1.3.6/doc/manual/htmldoc-development/Glossary.html for glossary(Glossary) Writing /var/tmp/portage/sci-geosciences/gpsbabel-1.3.6/work/gpsbabel-1.3.6/doc/manual/htmldoc-development/index.html for book(GPSBabel_Documentation_Book) chmod 755 tools/mkcapabilities tools/mkcapabilities Missing doc for alantrl Missing doc for alanwpr ... Missing doc for yahoo * * ERROR: sci-geosciences/gpsbabel-1.3.6 failed. Reproducible: Always root@lynx:/root(53)# emerge --info Portage 2.1.6.13 (default/linux/amd64/2008.0/desktop, gcc-4.3.3, glibc-2.10.1-r0, 2.6.29-gentoo-r5 x86_64) ================================================================= System uname: Linux-2.6.29-gentoo-r5-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T8300_@_2.40GHz-with-gentoo-2.0.1 Timestamp of tree: Fri, 29 May 2009 06:30:01 +0000 app-shells/bash: 4.0_p24 dev-java/java-config: 2.1.8 dev-lang/python: 2.5.4-r2, 2.6.2-r1 dev-python/pycrypto: 2.0.1-r8 dev-util/cmake: 2.6.3-r1 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.4.3-r2 sys-apps/sandbox: 1.9 sys-devel/autoconf: 2.13, 2.63-r1 sys-devel/automake: 1.4_p6, 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.19.1-r1 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.29 ACCEPT_KEYWORDS="amd64 ~amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=nocona -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/kde/4.2/env /usr/kde/4.2/share/config /usr/kde/4.2/shutdown /usr/sha re/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/ph p/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat .d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" FFLAGS="-march=nocona -O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LC_ALL="C" LDFLAGS="-Wl,-O1" LINGUAS="de fr" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --excl ude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/n4g /usr/local/portage/layman/dotnet /usr/local/portage/layman/science /usr/local/portage/layman/jokey /usr/local/po rtage/layman/java-overlay /usr/local/portage/layman/suka /usr/local/portage/layman/zugaina /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X Xaw3d a52 aac acl acpi administrator afs aiglx alsa amd64 amrr ao aotuv apache2 asf atlas auctex audacious audiofile automount bash-completion beagle be rkdb bjam blas bluetooth bonobo boo boost branding bzip2 c++ cairo cardbus cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib cran crypt c ups curl cxx daap dbus device-mapper dga dia divx djvu dlloader dmi doc dri ds3490 dv dvb dvd dvdr dvdread dvi dxr3 dynagraph eds effects elf emacs emboss enco de epiphany esd evo examples exif expat extra fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fuse galago gd gdal gdbm geos gif gimp gimppri nt ginac glade glib glitz gml gmp gnokii gnome gnome-keyring gnuplot gnutls gphoto2 gpm graphics graphviz gs gsl gsm gstreamer gtk guile hal hardened harness h ddtemp hdf hdf5 hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb ipod ipv6 irda irmc isdnlog ithreads jabber java java5 java6 jbig john jpeg jpeg2k kde kde4 kdeprefix kerberos kexi keyring kvm ladspa lame lapack laptop latex lcms ldap libffi libgda libnotify libsamplerate lirc lua lzo lzw mad maildi r mailwrapper math matroska midi mikmod mmx mmxext mng mod mono motif mozdevelop mozilla mozsvg mozxmlterm mp3 mp4 mp4live mpeg mpeg2 mplayer mtp mudflap multi lib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs numarray numeric nvidia obex o caml octave odbc ogdi ogg ole openexr opengl openmp pae pam pcre pda pdf perl pipechan plotutils plugins png podcast policykit posix postgres postscript ppds p ppd preview-latex proj projectx pstricks python qhull qt3 qt3support qt4 quicktime readline reflection reiserfs rhythmbox rle rpc rrdcgi rrdtool samba sasl sci ence sdl server session slang slp smp sndfile snmp soup sox speex spell spl sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg sy sfs szip t1lib tcl tcpd tex theora threads thunderbird tidy tiff tk truetype unicode usb userlocales utempter v4l2 vorbis wav webkit wifi wmf wxwindows xattr x cb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare ds noop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions a lias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user a utoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem _cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost _alias" DVB_CARDS="usb-wt220u" ELIBC="glibc" INPUT_DEVICES="keyboard mouse synaptics " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="ide websvccommon nb harness apisupport groovy gsf j2ee java xml" USE RLAND="GNU" VIDEO_CARDS="nv nvidia vesa" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
emerge -pvq sci-geosciences/gpsbabel and the build.log please.
root@lynx:/root(9)# emerge -pvq sci-geosciences/gpsbabel [ebuild R ] sci-geosciences/gpsbabel-1.3.6 USE="doc* usb -debug" root@lynx:/root(10)# emerge -vD sci-geosciences/gpsbabel ... chmod 755 tools/mkcapabilities tools/mkcapabilities Missing doc for alantrl ... Missing doc for yahoo Jun 2, 2009 3:24:57 PM org.apache.fop.apps.FOURIResolver resolve SEVERE: Error with opening URL 'http://docbook.sourceforge.net/release/images/draft.png': Connection timed out ... at org.apache.fop.cli.Main.main(Main.java:197) make: *** [gpsbabel.pdf] Error 1 I suppose that it is a firewall problem. I don't know, how I have to configure java-doc, that it can pass our firewall.
Created attachment 193289 [details] /var/tmp/portage/sci-geosciences/gpsbabel-1.3.6/temp/build.log
I have to correct my assumption that the firewall is the reason of problem. I get at least a similar error, if the computer is at a site without a firewall. ... Writing /var/tmp/portage/sci-geosciences/gpsbabel-1.3.6/work/gpsbabel-1.3.6/doc/manual/htmldoc-development/filter_interpolate.html for section(filter_interpolate) Writing /var/tmp/portage/sci-geosciences/gpsbabel-1.3.6/work/gpsbabel-1.3.6/doc/manual/htmldoc-development/filter_height.html for section(filter_height) Jun 3, 2009 6:45:25 AM org.apache.fop.fonts.FontInfo notifyFontReplacement WARNING: Font 'Symbol,normal,700' not found. Substituting with 'Symbol,normal,400'. Jun 3, 2009 6:45:25 AM org.apache.fop.fonts.FontInfo notifyFontReplacement WARNING: Font 'ZapfDingbats,normal,700' not found. Substituting with 'ZapfDingbats,normal,400'. Writing /var/tmp/portage/sci-geosciences/gpsbabel-1.3.6/work/gpsbabel-1.3.6/doc/manual/htmldoc-development/filter_track.html for section(filter_track) Jun 3, 2009 6:45:25 AM org.apache.fop.hyphenation.Hyphenator getHyphenationTree SEVERE: Couldn't find hyphenation pattern en Writing /var/tmp/portage/sci-geosciences/gpsbabel-1.3.6/work/gpsbabel-1.3.6/doc/manual/htmldoc-development/filter_sort.html for section(filter_sort) ... Writing /var/tmp/portage/sci-geosciences/gpsbabel-1.3.6/work/gpsbabel-1.3.6/doc/manual/htmldoc-development/index.html for book(GPSBabel_Documentation_Book) chmod 755 tools/mkcapabilities tools/mkcapabilities Missing doc for alantrl ... Missing doc for yahoo Jun 3, 2009 6:45:29 AM org.apache.fop.fonts.FontInfo notifyFontReplacement WARNING: Font 'ZapfDingbats,italic,400' not found. Substituting with 'ZapfDingbats,normal,400'. Jun 3, 2009 6:45:30 AM org.apache.fop.fo.flow.table.TableColumn bind WARNING: table-layout="fixed" and column-width unspecified => falling back to proportional-column-width(1) ... Jun 3, 2009 6:45:30 AM org.apache.fop.fo.flow.table.TableColumn bind WARNING: table-layout="fixed" and column-width unspecified => falling back to proportional-column-width(1) Jun 3, 2009 6:45:30 AM org.apache.fop.cli.Main startFOP SEVERE: Exception javax.xml.transform.TransformerException: org.apache.fop.fo.ValidationException: Error(2037/1206): column-number or number of cells in the row overflows the number of fo:table-column specified for the table. at org.apache.fop.cli.InputHandler.transformTo(InputHandler.java:217) at org.apache.fop.cli.InputHandler.renderTo(InputHandler.java:125) at org.apache.fop.cli.Main.startFOP(Main.java:166) at org.apache.fop.cli.Main.main(Main.java:197) Caused by: javax.xml.transform.TransformerException: org.apache.fop.fo.ValidationException: Error(2037/1206): column-number or number of cells in the row overflows the number of fo:table-column specified for the table. at org.apache.xalan.transformer.TransformerIdentityImpl.transform(TransformerIdentityImpl.java:502) at org.apache.fop.cli.InputHandler.transformTo(InputHandler.java:214) ... 3 more ... at org.apache.fop.cli.Main.startFOP(Main.java:166) at org.apache.fop.cli.Main.main(Main.java:197) make: *** [gpsbabel.pdf] Error 1 * * ERROR: sci-geosciences/gpsbabel-1.3.6 failed.
Sounds like a bug in the java xml parser thing that it uses..
got the same problem here: Writing /home/uhai/Fotos/portage/sci-geosciences/gpsbabel-1.3.6/work/gpsbabel-1.3.6/doc/manual/htmldoc-development/index.html for book(GPSBabel_Documentation_Book) chmod 755 tools/mkcapabilities tools/mkcapabilities Missing doc for alantrl Missing doc for alanwpr [...] Missing doc for wfff Missing doc for wbt-bin Missing doc for wbt Missing doc for wbt-tk1 Missing doc for yahoo * * ERROR: sci-geosciences/gpsbabel-1.3.6 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 126: Called die * The specific snippet of code: * emake doc || die; * The die message: * (no error message) * * If you need support, post the topmost build error, and the call stack if relevant. * A complete build log is located at '/home/uhai/Fotos/portage/sci-geosciences/gpsbabel-1.3.6/temp/build.log'. * The ebuild environment file is located at '/home/uhai/Fotos/portage/sci-geosciences/gpsbabel-1.3.6/temp/environment'. * >>> Failed to emerge sci-geosciences/gpsbabel-1.3.6, Log file: >>> '/home/uhai/Fotos/portage/sci-geosciences/gpsbabel-1.3.6/temp/build.log' This is my emerge- -info: Portage 2.1.6.13 (default/linux/x86/2008.0/desktop, gcc-4.3.2, glibc-2.9_p20081201-r2, 2.6.29-gentoo-r5 i686) ================================================================= System uname: Linux-2.6.29-gentoo-r5-i686-AMD_Athlon-tm-with-glibc2.0 Timestamp of tree: Fri, 17 Jul 2009 03:45:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 3.2_p39 dev-java/java-config: 1.3.7-r1, 2.1.8-r1 dev-lang/python: 2.4.4-r14, 2.5.4-r3 dev-util/ccache: 2.4-r7 dev-util/cmake: 2.6.2-r1 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.13, 2.63 sys-devel/automake: 1.4_p6, 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.27-r2 ACCEPT_KEYWORDS="x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=athlon -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/X11/xorg.conf /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -march=athlon -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="ccache distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="ftp://ftp.tu-clausthal.de/pub/linux/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ ftp://linux.rz.ruhr-uni-bochum.de/gentoo-mirror/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo ftp://ftp.uni-erlangen.de/pub/mirrors/gentoo ftp://ftp.join.uni-muenster.de/pub/linux/distributions/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://ftp.join.uni-muenster.de/pub/linux/distributions/gentoo http://mirrors.sec.informatik.tu-darmstadt.de/gentoo/ http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.gentoo.mesh-solutions.com/gentoo/ http://pandemonium.tiscali.de/pub/gentoo/ ftp://pandemonium.tiscali.de/pub/gentoo/ http://gentoo.mneisen.org/ ftp://ftp.mneisen.org/gentoo http://mirror.switch.ch/ftp/mirror/gentoo/ ftp://mirror.switch.ch/mirror/gentoo/ ftp://ftp.solnet.ch/mirror/Gentoo http://gentoo.mirror.solnet.ch " LANG="de_DE.UTF-8" LC_ALL="de_DE.UTF-8" LDFLAGS="-Wl,-O1" LINGUAS="de" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/home/uhai/Fotos" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/sunrise /usr/portage/local/layman/openstreetmap /usr/portage/local/layman/pro-audio /usr/local/portage" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa ao apache2 arts audiofile berkdb bitmap-fonts bluetooth bzip2 cairo cda cdparanoia cdr cli cracklib crypt cups dbus dga dmx doc dri dssi dvd dvdr dvdread emboss encode esd evo fam firefox fortran gd gdbm gif glitz gpm gps gstreamer gtk hal iconv ipv6 isdnlog java jpeg jpeg2k kde kde4 lame ldap libnotify mad midi mikmod mp3 mpeg mudflap musicbrainz mysql ncurses nls nptl nptlonly nvidia objc ogg opengl openmp pam pcre pda pdf perl png ppds pppd prce print python qt3 qt3support qt4 quicktime readline reflection samba sdl session snmp sockets spell spl ssl startup-notification svg symlink sysfs tcpd tiff truetype truetype-fonts type1-fonts unicode usb v4l v4l2 vorbis wavpack wddx win32codecs x86 xine xml xml2 xorg xpm xscreensaver xulrunner xv xvid xvmc zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de" USERLAND="GNU" VIDEO_CARDS="nvidia v4l vesa fbdev sis" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS any ideas? uhai
A short-term fix is to build gpsbabel without the doc USE flag: echo "sci-geosciences/gpsbabel -doc" >> /etc/portage/package.use and remerge gps babel. It's not a real solution, but it keeps my world updates going.
It works with a downgraded =dev-java/fop-0.93-r1 .
(In reply to comment #8) > It works with a downgraded =dev-java/fop-0.93-r1 . I mailed this bug to the upstream developers.
Any news from upstream?
Only that we should have a look ourselves. GPSBabel 1.3.7 is available as a pre-release, maybe it is fixed there.
But there is not yea a source package of GPSBabel-1.3.7Beta at http://www.gpsbabel.org/download.html. And downgrade of fop to fop-0.93-r1 neither works for me.If I try to install fop-0.93-r1, emerge tries to install "=dev-java/eclipse-ecj-3.2*. If I create an overlay for eclipse-ecj-3.2.2, this overlay wants to download eclipse-ecj-3.2.2.tar.bz2, which is not found.
*** Bug 334471 has been marked as a duplicate of this bug. ***
I just removed USE=doc from the ebuild for 1.4.2.
