Please stabilize sci-biology/bioperl-run-1.6.1.
Test Summary Report ------------------- t/Vista.t (Wstat: 65280 Tests: 5 Failed: 0) Non-zero exit status: 255 Parse errors: Bad plan. You planned 7 tests but ran 5. Files=67, Tests=1703, 15 wallclock secs ( 0.34 usr 0.08 sys + 12.04 cusr 1.25 csys = 13.71 CPU) Result: FAIL Failed 1/67 test programs. 0/1703 subtests failed. Portage 2.1.6.11 (default/linux/x86/2008.0/desktop, gcc-4.3.2, glibc-2.8_p20080602-r1, 2.6.29-gentoo-r4 i686) ================================================================= System uname: Linux-2.6.29-gentoo-r4-i686-Intel-R-_Core-TM-2_Duo_CPU_T8100_@_2.10GHz-with-glibc2.0 Timestamp of tree: Tue, 26 May 2009 05:30:03 +0000 app-shells/bash: 3.2_p39 dev-java/java-config: 2.1.7 dev-lang/python: 2.4.6, 2.5.4-r2 dev-python/pycrypto: 2.0.1-r8 dev-util/cmake: 2.6.2-r1 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.13, 2.63 sys-devel/automake: 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.27-r2 ACCEPT_KEYWORDS="x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=i686 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/openfire/resources/security/ /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -march=i686 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LANG="en_EN.UTF8" LDFLAGS="-Wl,--as-needed" LINGUAS="en" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="3dnow 3dnowext X acl acpi alsa apache apache2 apm bash-completion berkdb bluetooth bootsplash branding bzip2 cairo cdr cdrom cli cracklib crypt css cups curl dbus directfb dri dvd dvdr dvdread dvi eds emacs emboss encode escreen esd evo fam fat fbcon fbcondecor ffmpeg firefox foomatic fortran gdbm gif gnome gpm gstreamer gtk hal iconv imlib ipv6 isdnlog jadetex jpeg jpeg2k kde kpathsea laptop latex ldap libnotify libotf lm_sensors m17n-lib mad midi mikmod mmx mp3 mpeg mudflap ncurses nls nptl nptl-only nptlonly ntfs ogg opengl openmp openssh pam pcre pdf perl pmu png ppds pppd preview-latex python qt3 qt3support qt4 quicktime readline reflection reports sdl session smp spell spl sqlite sse ssl startup-notification svg svga sysfs t1lib tcpd test-framework tetex theora tiff toolkit-scroll-bars truetype unicode usb userlocales vorbis win32codecs wmf x86 xft xml xorg xpm xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="synaptics mouse keyboard" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en" USERLAND="GNU" VIDEO_CARDS="vesa fbdev intel" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
I cannot reproduce this error. Tests finish fine for me. I don't have Vista.jar installed though, so that test gets skipped. Anyway, I will need to do more work on the tests for this package as they depend on a ton of unsupported external packages, and the tests are only run if their packages are installed, so I'll need to install and check with every package separately. I'll push out a revision with support for tests later. For now I've disabled the tests, please stabilize.
x86 stable
amd64 stable, all arches done.
