It is impossible to emerge sci-chemistry-pymol-1.1-r2, apparently due to a problem with svn fetching the sources. Reproducible: Always Steps to Reproduce: 1. emerge pymol Actual Results: Early in the emerge process one receives the error: >>> Unpacking source... * subversion switch start --> * old repository: https://svn.sourceforge.net/svnroot/pymol/branches/b099/pymol@3013 * new repository: https://pymol.svn.sourceforge.net/svnroot/pymol/branches/b11/pymol svn: 'https://svn.sourceforge.net/svnroot/pymol/branches/b099/pymol' is not the same repository as 'https://pymol.svn.sourceforge.net/svnroot/pymol' python-updater has been run. Expected Results: emerge should work Has the location of the pymol sources changed requiring a change to the ebuild?
try rm -rf /usr/portage/distfiles/svn-src/pymol and reemerge again.
*** This bug has been marked as a duplicate of bug 194676 ***
Removing the old svn distribution direction for pymol appears to resolve this problem. Thanks.