After compiling hdf5, emerge will fail trying to sed "/var/tmp/portage/sci-libs/hdf5-1.6.7/image/var/tmp/portage/sci-libs/hdf5-1.6.7/image/usr/bin/h5cc" Note that /var/tmp/portage/sci-libs/hdf5-1.6.7/image/usr/bin/h5cc does exist Reproducible: Always Steps to Reproduce: Portage 2.2_rc21 (default/linux/amd64/2008.0/desktop, gcc-4.3.2, glibc-2.9_p20081201-r1, 2.6.28-gentoo x86_64) ================================================================= System uname: Linux-2.6.28-gentoo-x86_64-AMD_Athlon-tm-_64_X2_Dual-Core_Processor_TK-53-with-glibc2.2.5 Timestamp of tree: Wed, 14 Jan 2009 00:45:01 +0000 ccache version 2.4 [disabled] app-shells/bash: 3.2_p48 dev-java/java-config: 1.3.7-r1, 2.1.6-r1 dev-lang/python: 2.5.2-r8 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r8 dev-util/cmake: 2.6.2-r1 sys-apps/baselayout: 2.0.0 sys-apps/openrc: 0.4.1-r1 sys-apps/sandbox: 1.3.2 sys-devel/autoconf: 2.13, 2.63 sys-devel/automake: 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.19 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.28-r1 ACCEPT_KEYWORDS="amd64 ~amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -fomit-frame-pointer -march=athlon64" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -pipe -fomit-frame-pointer -march=athlon64" DISTDIR="/usr/portage/distfiles" FEATURES="candy distlocks fixpackages parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-orphans userfetch userpriv usersandbox" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1" LINGUAS="en en_US" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage /usr/portage/local/layman/sunrise /usr/portage/local/layman/science /usr/portage/local/layman/openstreetmap /usr/portage/local/layman/ephemeral" SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage" USE="3dnow 3dnowext X Xaw3d a52 aac aalib acl acpi addbookmarks agg aim aio akode alias alsa amarok amazon amd64 amr amrnb amrwb archive ares async autoreplace avahi background bash-completion binary-drivers bittorrent bluetooth bonjour boost branding bzip2 cairo captury cdaudio cdda cddb cdio cdparanoia cdr cg chm cli color-console connectionstatus contactnotes corefonts cracklib crypt css cups curl cviewer cxx daap dbus designer-plugin device-mapper dga dia dillo directfb disk-partition dmx dnd dri dts dvd dvdchapjump dvdnav dvdr dvdread dvi emacs emboss enca encode escreen exif extra-cardsets fam fame fasttrack fbcon fbcondecor ffmpeg fftw firefox fits flac fontconfig fortran ftp fuse galago games gammu gd gdbm geoip ggi gif ginac git glib glitz glut gnokii gnome gnome-keyring gnuplot gnutella gnutls google gpg gpgme gphoto2 gpm gps grammar graphics graphviz gs gstreamer gtk gtkhtml gzip-el hal hddtemp hdf5 highlight history hpn htmlhandbook humanities hyperestraier iconv icu id3tag ide imagemagick imap imlib inkjar inotify ipod iproute2 ipv6 irc isdnlog jabber java java6 javascript jingle john jpeg kate kde kde4 kdehiddenvisibility kdrive kpathsea kqemu lame laptop latex lcms ldap libcaca libedit libgcrypt libnotify libssh2 libwww live lm_sensors lyx lzo mad mapnik math mecab metalink midi mikmod mmap mmx mmxext mng mono moonlight mozdevelop mozsha1 mp2 mp3 mp3tunes mp4 mpeg mplayer msn mtp mudflap multilib musepack music musicbrainz mysqlixmlwriter nano-syntax nas ncurses netmeeting netpbm network network-cron networkmanager new-login nforce2 nls nntp nova nowlistening npp nptl nptlonly nsplugin nvidia obex offensive ofx ogg openal openft opengl openmp openstreetmap oscar otr pam paste64 pch pcre pdf perl phonon physfs pidgin pixmaps plotutils plugins pmu png pnm policykit postscript ppds pppd prediction pth python qhull qq qt3 qt3support qt4 quicktime radio rar readline reflection rss rtc rtsp samba sasl sbcl scenarios science screen scripts sdl sdl-image sensord session shorten shout skins slang slp smp sms snmp solver sound speex spell spl srt sse sse2 ssl ssse3 startup-notification statistics stream subversion suid svg sysfs syslog t1lib taglib tagwriting tcpd tex4ht texteffect themes theora thesaurus tidy tiff toolbar tordns translater truetype tunepimp twolame umfpack unicode upnp usb utempter valgrind vcd vim vim-pager vim-syntax vim-with-x visualization vlm vnc vorbis wavpack webpresence wifi winpopup wma wmf wmp x264 xattr xcb xcomposite xext xface xforms xft xgetdefault xine xinerama xml xorg xosd xplanet xrandr xscreensaver xulrunner xv xvid xvmc yahoo zeroconf zip zlib zsh-completion" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en en_US" USERLAND="GNU" VIDEO_CARDS="nvidia nv vesa fbdev nouveau" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 178607 [details] build.log for sci-libs/hdf5-1.6.7
Same problem here with x86. I see two errors: mv: cannot stat `/var/tmp/portage/sci-libs/hdf5-1.6.7/image/usr/bin/h5pfc': No such file or directory !!! dosed: /var/tmp/portage/sci-libs/hdf5-1.6.7/image/var/tmp/portage/sci-libs/hdf5-1.6.7/image/usr/bin/h5cc does not exist h5cc is present but h5pfc does not exist. I'm not sure why h5pfc would be present, as I don't have mpi or threads selected? sci-libs/hdf5-1.6.7 USE="cxx ssl zlib -debug -fortran -mpi -szip -threads -tools -hlapi -static"
Created attachment 179365 [details] Updated ebuild This fixes the problem for me. I changed {D} for {ROOT} in src_install, installs fine with x86.
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