FASTA is a DNA and Protein sequence alignment software package, created before NCBI Blast but still maintained. Some tools included in the software package (like ssearch) are very useful. The donwload page for the source package is: http://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml Reproducible: Always I have created an ebuild for this package, and I'm going to add it in the next bug update.
Created attachment 159319 [details] sci-biology/fasta-35.3.6.ebuild The ebuild for the FASTA package
Created attachment 159321 [details] FASTA license License for the FASTA package, used by the ebuild.
Tested on x86 and works fine. I attach my emerge --info output. Please, consider informing gentoo-science mailing list about your ebuild (if you haven't done so yet) in order to put the ebuild into science overlay faster.
Portage 2.1.4.4 (default/linux/x86/2008.0, gcc-4.3.1, glibc-2.6.1-r0, 2.6.24.21-markowy i686) ================================================================= System uname: 2.6.24.21-markowy i686 Intel(R) Celeron(R) M processor 1.60GHz Timestamp of tree: Sat, 05 Jul 2008 16:47:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 3.2_p33 dev-lang/python: 2.4.4-r13 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r7 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.61-r2 sys-devel/automake: 1.7.9-r1, 1.9.6-r2, 1.10.1 sys-devel/binutils: 2.18-r1 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=pentium-m -pipe -g -ggdb" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d /usr/X11R6/bin/startx" CXXFLAGS="-O2 -march=pentium-m -pipe -g -ggdb" DISTDIR="/tmp/portage/distfiles" FEATURES="ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://de-mirror.org/distro/gentoo/" LANG="pl" LINGUAS="pl en" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/tmp/portage/tmpdir" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/swegener /usr/portage/local/layman/sunrise /usr/portage/local/layman/science /usr/local/portage" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="acl bash-completion berkdb bzip2 cli cracklib crypt dri fortran gcj gd gdbm gpm iconv ipv6 isdnlog midi mudflap ncurses nls nptl nptlonly objc openmp pam pcre perl pppd python readline reflection session spl ssl tcpd unicode x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="pl en" USERLAND="GNU" VIDEO_CARDS="vga i810" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
In the science overlay for testing. Thanks! je_fro
