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Bug 221159 - sci-biology/biopython-1.44: stabilization request
Summary: sci-biology/biopython-1.44: stabilization request
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Development (show other bugs)
Hardware: All Linux
: High normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: STABLEREQ
Depends on:
Blocks:
 
Reported: 2008-05-10 05:28 UTC by Martin Mokrejš
Modified: 2008-07-14 16:58 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


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Description Martin Mokrejš 2008-05-10 05:28:07 UTC
Please stabilize for x86 and amd64
Comment 1 Olivier Fisette (RETIRED) gentoo-dev 2008-07-06 15:22:34 UTC
Stable on amd64.

Other arches: Please stabilise this version. You can test a Biopython installation in an interactive Python interpreter by typing the following commands:

>>> from Bio.Seq import Seq
>>> from Bio.Alphabet.IUPAC import unambiguous_dna
>>> new_seq = Seq('GATCAGAAG', unambiguous_dna)
>>> new_seq[0:2]
Seq('GA', IUPACUnambiguousDNA())
>>> from Bio import Translate
>>> translator = Translate.unambiguous_dna_by_name["Standard"]
>>> translator.translate(new_seq)
Seq('DQK', HasStopCodon(IUPACProtein(), '*'))

Martin: Thanks for the notice. You might also want to check version 1.47 that I just added to the tree.
Comment 2 Raúl Porcel (RETIRED) gentoo-dev 2008-07-07 15:50:12 UTC
alpha/sparc/x86 stable
Comment 3 nixnut (RETIRED) gentoo-dev 2008-07-14 16:58:04 UTC
ppc stable. closing since we're last