x86_64-pc-linux-gnu-gcc -m64 -fomit-frame-pointer -fno-stack-protector -O2 -g -Wmissing-prototypes -Wall -Wshadow -Wpointer-arith -Wstrict-prototypes -Wmissing-declarations -fno-strict-aliasing -O2 -march=k8 -Wno-long-long -Wno-pointer-sign -Wdeclaration-after-statement -fno-stack-protector -m64 -fomit-frame-pointer -fno-stack-protector -O2 -g -Wmissing-prototypes -Wall -Wshadow -Wpointer-arith -Wstrict-prototypes -Wmissing-declarations -fno-strict-aliasing -o valgrind-listener valgrind_listener-valgrind-listener.o mpicc -g -O -fno-omit-frame-pointer -Wall -fpic -shared -m64 \ -I../include \ -o libmpiwrap-AMD64_LINUX.so libmpiwrap.c libmpiwrap.c: In function 'walk_type': libmpiwrap.c:651: warning: cast from pointer to integer of different size libmpiwrap.c:652: warning: cast from pointer to integer of different size libmpiwrap.c:657: warning: cast from pointer to integer of different size libmpiwrap.c:658: warning: cast from pointer to integer of different size libmpiwrap.c:663: warning: cast from pointer to integer of different size libmpiwrap.c:664: warning: cast from pointer to integer of different size libmpiwrap.c:669: warning: cast from pointer to integer of different size libmpiwrap.c:670: warning: cast from pointer to integer of different size libmpiwrap.c:675: warning: cast from pointer to integer of different size libmpiwrap.c:676: warning: cast from pointer to integer of different size libmpiwrap.c:681: warning: cast from pointer to integer of different size libmpiwrap.c:682: warning: cast from pointer to integer of different size libmpiwrap.c: In function 'maybe_complete': libmpiwrap.c:1306: warning: format '%p' expects type 'void *', but argument 5 has type 'MPI_Request' /usr/lib/gcc/x86_64-pc-linux-gnu/4.2.2/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(comm_rank.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib64/libmpich.a: could not read symbols: Bad value collect2: ld returned 1 exit status make[2]: *** [libmpiwrap-AMD64_LINUX.so] Error 1 Reproducible: Always root@grizzly:/var/tmp(7)# emerge --info * Overlay eclass overrides eclass from PORTDIR: * * '/usr/portage/local/layman/science/eclass/fortran.eclass' * * It is best to avoid overridding eclasses from PORTDIR because it will * trigger invalidation of cached ebuild metadata that is distributed with * the portage tree. If you must override eclasses from PORTDIR then you * are advised to run `emerge --regen` after each time that you run `emerge * --sync`. Set PORTAGE_ECLASS_WARNING_ENABLE="0" in /etc/make.conf if you * would like to disable this warning. Portage 2.1.4_rc10 (default-linux/amd64/2007.0, gcc-4.2.2, glibc-2.7-r1, 2.6.23-gentoo-r3 x86_64) ================================================================= System uname: 2.6.23-gentoo-r3 x86_64 AMD Athlon(tm) 64 Processor 3200+ Timestamp of tree: Tue, 18 Dec 2007 09:00:01 +0000 distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] ccache version 2.4 [disabled] app-shells/bash: 3.2_p17-r1 dev-java/java-config: 1.3.7, 2.1.3 dev-lang/python: 2.4.4-r7, 2.5.1-r4 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r7 sys-apps/baselayout: 1.12.10-r5 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.18-r1 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.24 virtual/os-headers: 2.6.23-r2 ACCEPT_KEYWORDS="amd64 ~amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=k8" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc /php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rul es.d" CXXFLAGS="-O2 -march=k8" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks fixpackages metadata-transfer sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/g entoo/ rsync://ftp.fi.muni.cz/pub/linux/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.r wth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ " LINGUAS="de fr" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-a fter --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/science /usr/local/portage /usr/local/sci" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="3dnow 3dnowext X Xaw3d a52 aac acl acpi administrator afs aiglx alsa amd64 amrr ao aotuv apache2 asf atlas auctex a udacious audiofile automount bash-completion beagle berkdb bitmap-fonts bjam blas bluetooth bonobo boo bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli corba cracklib cran crypt cups curl daap dbus device-mapper dga dia divx dlload er dmi dri ds3490 dv dvb dvd dvdr dvi dxr3 dynagraph eds effects elf emacs emboss encode epiphany esd evo examples exif expat extra fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx galago gd gdal gdbm geos gif gimp gimppri nt ginac glade glitz gml gmp gnokii gnome gnuplot gnutls gphoto2 gpm graphics graphviz gs gsl gsm gstreamer gtk guile ha l hardened hddtemp hdf hdf5 hlapi http iconv icq id3 imagemagick imap innodb ipv6 irda irmc isdnlog ithreads jabber java jbig john jp2 jpeg jpeg2k kerberos kexi keyring ladspa lame lapack latex lcms ldap libgda libsamplerate lirc lm_sensors lua lzo lzw mad maildir math matroska midi mmx mmxext mng mod mono motif mozdevelop mozilla mozsvg mozxmlterm mp3 mp4 m p4live mpeg mpeg2 mplayer mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network nfs nls nntp nptl nptlonly ntfs numarray numeric obex ocaml octave odbc ogdi ogg ole opengl openmp pae pam pcre pda pdf perl plotutils pl ugins png posix postgres postscript pppd preview-latex proj projectx pstricks python qhull quicktime readline reflection reiserfs rhythmbox rle rrdcgi rrdtool samba sasl science sdl session slang slp sndfile snmp sox speex spell spl sqlite sse sse2 ssl subtitles subversion svg t1lib tcl tcpd tex theora threads thunderbird tidy tiff tk truetype truetype-fonts type1-fonts unicode userlocales utempter v4l2 vorbis wmf wxwindows xattr xemacs xext xine xml xmlreader xmlrpc xorg xpm xv xvid xvmc zlib zvbi" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es 1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS ="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn _default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cach e mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" DVB_CARDS="tda100 46 saa7134" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" LIRC_DEVICES="hauppauge_dvb" USERLAND="GNU" VIDEO_CARDS="radeon vesa fbdev" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_ FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
See here for info: http://bugs.kde.org/show_bug.cgi?id=154240 Unfortunately I don't have time to work on this until about January 4.
Can you please provide the output of: equery belongs /usr/lib64/libmpich.a
I have the same error, output of "equery belongs /usr/lib/libmpich.a" is sys-cluster/mpich-1.2.7_p1 (/usr/lib/libmpich.a)
Can someone explain why it is not linking against a shared object? If there is no libmpich.so, should libmpich.a be built with -fPIC?
(In reply to comment #4) > Can someone explain why it is not linking against a shared object? > If there is no libmpich.so, should libmpich.a be built with -fPIC? > It appears that if you don't pass in --without-mpicc, valgrind is nice enough to scan your system and try to use it anyways. A quick fix until tantive gets some time to fix mpich (if that's possible) would probably be to pass --without-mpicc to econf. That worked for me against lam-mpi and openmpi. Could someone verify this also works with mpich?
no change here since months?
ping!
I've added --without-mpicc to the valgrind ebuild... If you ever get to fix mpich to produce dynamic libs, I guess you can replace it with a use-dep and $(use_with mpi mpicc) ...
but the fix is not in portage, i still cannot compile it...
Olivier/Michael, can we do something for this? 3.3.1 is out too needs a bump
About the bump: what do you mean? 3.3.1 is in the tree already.
oh! for any reasons my emerge -uD world didn't show it. bumping to 3.3.1 fixed the issue, great. you can close this.
(In reply to comment #12) > oh! for any reasons my emerge -uD world didn't show it. > > bumping to 3.3.1 fixed the issue, great. > > you can close this. > 3.3.1 works for me as well, closing as fixed.
