A few weeks ago graphviz stopped emerge'ing for me. I thought I'd wait a while to see if subsequent "emerge --sync" cycles would clear it up. Alas, no improvement. The error seems to be java-related. I don't see any USE flags dealing with java. Reproducible: Always Steps to Reproduce: 1. emerge -avuND graphviz 2. 3. Actual Results: [snip] touch gv_java.man /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../lib/gvc -I../../lib/common -I../../lib/graph -I../../lib/cdt -I../../lib/pathplan -I/usr/lib/perl5/5.8.8/i686-linux/CORE -I/usr/include/python2.4 -O2 -march=i686 -pipe -MT gv_java.lo -MD -MP -MF .deps/gv_java.Tpo -c -o gv_java.lo gv_java.cpp mkdir .libs i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../lib/gvc -I../../lib/common -I../../lib/graph -I../../lib/cdt -I../../lib/pathplan -I/usr/lib/perl5/5.8.8/i686-linux/CORE -I/usr/include/python2.4 -O2 -march=i686 -pipe -MT gv.lo -MD -MP -MF .deps/gv.Tpo -c gv.cpp -fPIC -DPIC -o .libs/gv.o mv -f .deps/gv.Tpo .deps/gv.Plo /bin/sh ../../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../lib/gvc -I../../lib/common -I../../lib/graph -I../../lib/cdt -I../../lib/pathplan -I/usr/lib/perl5/5.8.8/i686-linux/CORE -I/usr/include/python2.4 -O2 -march=i686 -pipe -MT gv_perl.lo -MD -MP -MF .deps/gv_perl.Tpo -c -o gv_perl.lo gv_perl.cpp i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../lib/gvc -I../../lib/common -I../../lib/graph -I../../lib/cdt -I../../lib/pathplan -I/usr/lib/perl5/5.8.8/i686-linux/CORE -I/usr/include/python2.4 -O2 -march=i686 -pipe -MT gv_java.lo -MD -MP -MF .deps/gv_java.Tpo -c gv_java.cpp -fPIC -DPIC -o .libs/gv_java.o gv_java.cpp:138:17: error: jni.h: No such file or directory gv_java.cpp:162: error: variable or field 'SWIG_JavaThrowException' declared void gv_java.cpp:162: error: 'JNIEnv' was not declared in this scope gv_java.cpp:162: error: 'jenv' was not declared in this scope gv_java.cpp:162: error: expected primary-expression before 'code' gv_java.cpp:162: error: expected primary-expression before 'const' [snip] !!! ERROR: media-gfx/graphviz-2.12 failed. Call stack: ebuild.sh, line 1621: Called dyn_compile ebuild.sh, line 973: Called qa_call 'src_compile' ebuild.sh, line 44: Called src_compile graphviz-2.12.ebuild, line 161: Called die
You should post the output of emerge --info Looks like the ebuild passes --disable-java explicitly to the configure script so there should be no java built. My guess is some functionality triggered by some USE flag pulls it. So you should also post output of 'emerge -pv graphviz' so that we know what flags you are building it with.
# emerge -pv graphviz These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild N ] media-gfx/graphviz-2.12 USE="X examples perl python -doc -gnome -gtk -nls -pango -ruby -tcl -tk" 0 kB Total: 1 package (1 new), Size of downloads: 0 kB
I'm getting the same error while compiling graphviz 2.12. To find out more about this error, I downloaded the current stable version of graphviz from their website (version 2.16) and tried compiling it myself. The weird thing is, if I run configure with the --disable-java parameter, the build fails with the "gv_java.cpp:138:17: error: jni.h: No such file or directory" message, just like the gentoo ebuild. But if I _don't_ use the --disable-java parameter, the build compiles just fine. I should mention that I do have Java installed on my system. Maybe the --disable-java parameter works incorrectly on systems with Java available. Anyway, I can see that this issue has also been filed for graphviz under bug #1212: http://graphviz.org/bugs/b1212.html, so let's hope they'll fix it. In the mean time the workaround for systems such as mine seems to be to enable Java, not disable it. So can we please add a 'java' use flag to the graphviz package and make the --disable-java parameter optional?
Try your luck w/ 2.16.1-r3 or later and report back... Thanks.
No change, both 2.16.1-r4 and 2.18 fail with the same error.
(In reply to comment #5) > No change, both 2.16.1-r4 and 2.18 fail with the same error. > reopen
java USE-flag added to media-gfx/graphviz-2.18 - so this should be fixed.
