BLAT - The BLAST-Like Alignment Tool, a fast genomic sequence aligner License text, in its entirety: CONTENTS AND COPYRIGHT This archive contains the entire source tree for BLAT and associated utilities. All files are copyrighted, but license is hereby granted for personal, academic, and non-profit use. A license is also granted for the contents of the top level lib and inc directories for commercial users. Commercial users should contact jim_kent@pacbell.net for access to other modules.
Created attachment 88209 [details] blat-33.ebuild This ebuild will need some work on non-x86 platforms due to an unconventional build system. Also I haven't tested the web server features.
Created attachment 97908 [details] blat-33.ebuild honor user's CFLAGS
Created attachment 97909 [details] blat-33.ebuild forgot to clean up a bit
Created attachment 97910 [details] blat-33.ebuild and a bit more tidying
Created attachment 97988 [details] blat-33.ebuild and more tidying
The latest version can be found at http://www.gentoo-sunrise.org/sunrise/browser/reviewed/sci-biology/blat
I'm already in sci-bio.
I already watch this bug through the sci-biology alias.
This one looks rather clean (-34 version, in sunrise now). Just two, or even 1.5 remarks :). 1. MACHTYPE=$(tc-arch) [[ ${MACHTYPE} == "x86" ]] && MACHTYPE="i386" These lines are duplicated at the beginning src_compile and src_install. Ideally you wouldn't need to do this, but unfortunately this is a known portage bug - that it, somewhat randomly, looses settings between function calls. 2. The ${S}'s at the beginning of file specifications for sed, mkdir and dobin are unnecessary. portage cd's you to ${S} before running the src_compile and src_install code. Adding dep and reassigning as well.. George
Anybody pls working on this?
(In reply to comment #10) > Anybody pls working on this? > Yes, I'm working on it. After I'm done with my exams (May 10 ish) I'll commit it to mainline. Meanwhile, please install the Gentoo Sunrise overlay (http://overlays.gentoo.org/proj/sunrise) and install BLAT from there.
InCVS
Andrey, please provide also ~amd64. It works fine for me there. Thanks. BTW: No man pages or any docs?
Keyworded, thanks. No docs with this package, sorry. Please see the website and the help output for the program.
