| Summary: | sci-biology/augustus-3.4.0-r3 - ../.../sqliteDB.hh: error: uint64_t has not been declared | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | CONFIRMED --- | ||
| Severity: | normal | CC: | jy6x2b32pie9, matoro_bugzilla_gentoo, toralf |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 865117, 920140 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt.bz2 environment etc.clang.tar.bz2 etc.portage.tar.bz2 sci-biology:augustus-3.4.0-r3:20230218-010129.log temp.tar.bz2 |
||
Created attachment 852398 [details]
emerge-info.txt
Created attachment 852400 [details]
emerge-history.txt.bz2
Created attachment 852402 [details]
environment
Created attachment 852404 [details]
etc.clang.tar.bz2
Created attachment 852406 [details]
etc.portage.tar.bz2
Created attachment 852408 [details]
sci-biology:augustus-3.4.0-r3:20230218-010129.log
Created attachment 852410 [details]
temp.tar.bz2
Fixed upstream, in commit https://github.com/Gaius-Augustus/Augustus/commit/1ed97dc4ce2909c5f89737005b8ea4a664fbe728 Not in any existing release yet re-opened as requested via IRC |
too long lines were shrinked: x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o exonmodel.o exonmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o orthograph.o orthograph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o train_logReg_param.o train_logReg_param.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/my x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o utrmodel.o utrmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o sqliteDB.o sqliteDB.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ In file included from sqliteDB.cc:10: ../include/sqliteDB.hh:93:29: error: uint64_t has not been declared 93 | void bindInt64(int idx, uint64_t x); | ^~~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_plasma_systemd-j4-20230214-230019 ------------------------------------------------------------------- GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle" gcc-config -l: [1] x86_64-pc-linux-gnu-11 [2] x86_64-pc-linux-gnu-13 * clang/llvm (if any): clang version 15.0.7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/15/bin Configuration file: /etc/clang/clang.cfg /usr/lib/llvm/15 15.0.7 Python 3.10.10 Available Ruby profiles: [1] ruby27 (with Rubygems) [2] ruby30 (with Rubygems) * Available Rust versions: [1] rust-1.67.1 * The following VMs are available for generation-2: *) Eclipse Temurin JDK 17.0.6_p10 [openjdk-bin-17] 2) Eclipse Temurin JDK 8.362_p09 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-17 system-vm The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli (if any): [1] php7.4 [2] php8.0 [3] php8.2 * HEAD of ::gentoo commit b309713407bd4a43c5a55bd52d11dc6c55f0d685 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Fri Feb 17 23:46:58 2023 +0000 2023-02-17 23:46:57 UTC emerge -qpvO sci-biology/augustus [ebuild N ] sci-biology/augustus-3.4.0-r3 USE="-doc"