| Summary: | sci-biology/pysam-0.19.1 fails tests on MUSL: Fatal Python error: Segmentation fault | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Agostino Sarubbo <ago> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: | build.log | ||
|
Description
Agostino Sarubbo
2022-04-05 20:15:18 UTC
Created attachment 768917 [details]
build.log
build log and emerge --info
Error(s) that match a know pattern in addition to what has been reported in the summary:
/var/tmp/portage/sci-biology/pysam-0.17.0/temp/environment: line 1867: 6062 Segmentation fault "${@}"
Fatal Python error: Segmentation fault
Fatal Python error: Segmentation fault
tinderbox_musl has reproduced this issue with version 0.19.1 - Updating summary. Could you try with epytest -s? The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a46d8d048179a0c699775baa9eb4157949e4671c commit a46d8d048179a0c699775baa9eb4157949e4671c Author: David Seifert <soap@gentoo.org> AuthorDate: 2023-04-06 18:10:36 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2023-04-06 18:10:36 +0000 sci-biology/pysam: add 0.21.0 Bug: https://bugs.gentoo.org/836857 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/pysam/Manifest | 1 + sci-biology/pysam/pysam-0.21.0.ebuild | 66 +++++++++++++++++++++++++++++++++++ 2 files changed, 67 insertions(+) The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1cea5dc52d7f3cb7f2451d8e58bef8908b8df687 commit 1cea5dc52d7f3cb7f2451d8e58bef8908b8df687 Author: David Seifert <soap@gentoo.org> AuthorDate: 2023-04-06 19:29:06 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2023-04-06 19:29:06 +0000 sci-biology/pysam: drop 0.20.0 Closes: https://bugs.gentoo.org/836857 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/pysam/Manifest | 1 - sci-biology/pysam/pysam-0.20.0.ebuild | 69 ----------------------------------- 2 files changed, 70 deletions(-) |
