Summary: | sci-chemistry/gromacs-2022.4 does not enable tests | ||
---|---|---|---|
Product: | Gentoo Linux | Reporter: | Agostino Sarubbo <ago> |
Component: | Current packages | Assignee: | Alexey Shvetsov <alexxy> |
Status: | CONFIRMED --- | ||
Severity: | normal | CC: | mgorny, sci-chemistry |
Priority: | Normal | ||
Version: | unspecified | ||
Hardware: | All | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- | |
Bug Depends on: | |||
Bug Blocks: | 784263 | ||
Attachments: | build.log.xz |
Description
Agostino Sarubbo
![]() Created attachment 768914 [details]
build.log.xz
build log and emerge --info (compressed because it exceeds attachment limit, use 'xzless' to read it)
ci has reproduced this issue with version 2022.1 - Updating summary. You are wrong tests are enabled. Check lines in your log
[543/544] cd /var/tmp/portage/sci-chemistry/gromacs-2022/work/gromacs-2022_float && /usr/bin/ctest --output-on-failure -E physicalvalidationtests
Test project /var/tmp/portage/sci-chemistry/gromacs-2022/work/gromacs-2022_float
Start 1: GmxapiExternalInterfaceTests
1/87 Test #1: GmxapiExternalInterfaceTests ................... Passed 2.70 sec
Start 2: GmxapiInternalInterfaceTests
2/87 Test #2: GmxapiInternalInterfaceTests ................... Passed 0.68 sec
Start 3: NbLibListedForcesTests
3/87 Test #3: NbLibListedForcesTests ......................... Passed 0.05 sec
Start 4: NbLibSamplesTestArgon
4/87 Test #4: NbLibSamplesTestArgon .......................... Passed 0.01 sec
Start 5: NbLibSamplesTestMethaneWater
5/87 Test #5: NbLibSamplesTestMethaneWater ................... Passed 0.01 sec
Start 6: NbLibUtilTests
6/87 Test #6: NbLibUtilTests ................................. Passed 0.01 sec
Start 7: NbLibSetupTests
7/87 Test #7: NbLibSetupTests ................................ Passed 0.12 sec
Start 8: NbLibTprTests
8/87 Test #8: NbLibTprTests .................................. Passed 0.19 sec
Start 9: NbLibIntegrationTests
9/87 Test #9: NbLibIntegrationTests .......................... Passed 0.04 sec
Start 10: NbLibIntegratorTests
10/87 Test #10: NbLibIntegratorTests ........................... Passed 0.02 sec
Start 11: TestUtilsUnitTests
11/87 Test #11: TestUtilsUnitTests ............................. Passed 0.05 sec
Start 12: TestUtilsMpiUnitTests
12/87 Test #12: TestUtilsMpiUnitTests .......................... Passed 0.01 sec
Start 13: UtilityUnitTests
13/87 Test #13: UtilityUnitTests ............................... Passed 0.06 sec
Start 14: UtilityMpiUnitTests
14/87 Test #14: UtilityMpiUnitTests ............................ Passed 0.02 sec
Start 15: GmxlibTests
15/87 Test #15: GmxlibTests .................................... Passed 0.07 sec
Start 16: MdlibUnitTest
16/87 Test #16: MdlibUnitTest .................................. Passed 0.21 sec
Start 17: AwhTest
17/87 Test #17: AwhTest ........................................ Passed 0.05 sec
Start 18: DensityFittingAppliedForcesUnitTest
18/87 Test #18: DensityFittingAppliedForcesUnitTest ............ Passed 0.03 sec
Start 19: QMMMAppliedForcesUnitTest
19/87 Test #19: QMMMAppliedForcesUnitTest ...................... Passed 0.07 sec
Start 20: AppliedForcesUnitTest
20/87 Test #20: AppliedForcesUnitTest .......................... Passed 0.02 sec
Start 21: ListedForcesTest
21/87 Test #21: ListedForcesTest ............................... Passed 0.06 sec
Start 22: NbnxmTests
22/87 Test #22: NbnxmTests ..................................... Passed 0.02 sec
Start 23: CommandLineUnitTests
23/87 Test #23: CommandLineUnitTests ........................... Passed 0.03 sec
Start 24: DomDecTests
24/87 Test #24: DomDecTests .................................... Passed 0.02 sec
Start 25: DomDecMpiTests
25/87 Test #25: DomDecMpiTests ................................. Passed 0.12 sec
Start 26: EwaldUnitTests
26/87 Test #26: EwaldUnitTests ................................. Passed 0.39 sec
Start 27: FFTUnitTests
27/87 Test #27: FFTUnitTests ................................... Passed 0.20 sec
Start 28: GpuUtilsUnitTests
28/87 Test #28: GpuUtilsUnitTests .............................. Passed 0.16 sec
Start 29: HardwareUnitTests
29/87 Test #29: HardwareUnitTests .............................. Passed 0.31 sec
Start 30: MathUnitTests
30/87 Test #30: MathUnitTests .................................. Passed 0.16 sec
Start 31: MdrunUtilityUnitTests
31/87 Test #31: MdrunUtilityUnitTests .......................... Passed 0.02 sec
Start 32: MdrunUtilityMpiUnitTests
32/87 Test #32: MdrunUtilityMpiUnitTests ....................... Passed 0.05 sec
Start 33: MDSpanTests
33/87 Test #33: MDSpanTests .................................... Passed 0.02 sec
Start 34: MdtypesUnitTest
34/87 Test #34: MdtypesUnitTest ................................ Passed 0.04 sec
Start 35: OnlineHelpUnitTests
35/87 Test #35: OnlineHelpUnitTests ............................ Passed 0.02 sec
Start 36: OptionsUnitTests
36/87 Test #36: OptionsUnitTests ............................... Passed 0.03 sec
Start 37: PbcutilUnitTest
37/87 Test #37: PbcutilUnitTest ................................ Passed 0.02 sec
Start 38: RandomUnitTests
38/87 Test #38: RandomUnitTests ................................ Passed 0.03 sec
Start 39: RestraintTests
39/87 Test #39: RestraintTests ................................. Passed 0.01 sec
Start 40: TableUnitTests
40/87 Test #40: TableUnitTests ................................. Passed 0.16 sec
Start 41: TaskAssignmentUnitTests
41/87 Test #41: TaskAssignmentUnitTests ........................ Passed 0.03 sec
Start 42: GmxTimingTests
42/87 Test #42: GmxTimingTests ................................. Passed 0.02 sec
Start 43: TopologyTest
43/87 Test #43: TopologyTest ................................... Passed 0.03 sec
Start 44: PullTest
44/87 Test #44: PullTest ....................................... Passed 0.01 sec
Start 45: SimdUnitTests
45/87 Test #45: SimdUnitTests .................................. Passed 0.05 sec
Start 46: CompatibilityHelpersTests
46/87 Test #46: CompatibilityHelpersTests ...................... Passed 0.03 sec
Start 47: GmxAnaTest
47/87 Test #47: GmxAnaTest ..................................... Passed 0.96 sec
Start 48: GmxPreprocessTests
48/87 Test #48: GmxPreprocessTests ............................. Passed 0.93 sec
Start 49: Pdb2gmx1Test
49/87 Test #49: Pdb2gmx1Test ................................... Passed 1.84 sec
Start 50: Pdb2gmx2Test
50/87 Test #50: Pdb2gmx2Test ................................... Passed 2.59 sec
Start 51: Pdb2gmx3Test
51/87 Test #51: Pdb2gmx3Test ................................... Passed 3.42 sec
Start 52: CorrelationsTest
52/87 Test #52: CorrelationsTest ............................... Passed 1.32 sec
Start 53: AnalysisDataUnitTests
53/87 Test #53: AnalysisDataUnitTests .......................... Passed 0.07 sec
Start 54: CoordinateIOTests
54/87 Test #54: CoordinateIOTests .............................. Passed 0.18 sec
Start 55: TrajectoryAnalysisUnitTests
55/87 Test #55: TrajectoryAnalysisUnitTests .................... Passed 0.94 sec
Start 56: EnergyAnalysisUnitTests
56/87 Test #56: EnergyAnalysisUnitTests ........................ Passed 0.26 sec
Start 57: ToolUnitTests
57/87 Test #57: ToolUnitTests .................................. Passed 1.72 sec
Start 58: FileIOTests
58/87 Test #58: FileIOTests .................................... Passed 0.04 sec
Start 59: SelectionUnitTests
59/87 Test #59: SelectionUnitTests ............................. Passed 0.35 sec
Start 60: MdrunOutputTests
60/87 Test #60: MdrunOutputTests ............................... Passed 0.62 sec
Start 61: MdrunModulesTests
61/87 Test #61: MdrunModulesTests .............................. Passed 0.59 sec
Start 62: MdrunIOTests
62/87 Test #62: MdrunIOTests ................................... Passed 2.63 sec
Start 63: MdrunTestsOneRank
63/87 Test #63: MdrunTestsOneRank .............................. Passed 1.92 sec
Start 64: MdrunTestsTwoRanks
64/87 Test #64: MdrunTestsTwoRanks ............................. Passed 1.93 sec
Start 65: MdrunSingleRankAlgorithmsTests
65/87 Test #65: MdrunSingleRankAlgorithmsTests ................. Passed 1.40 sec
Start 66: MdrunNonIntegratorTests
66/87 Test #66: MdrunNonIntegratorTests ........................ Passed 4.52 sec
Start 67: MdrunTpiTests
67/87 Test #67: MdrunTpiTests .................................. Passed 0.88 sec
Start 68: MdrunMpiTests
68/87 Test #68: MdrunMpiTests .................................. Passed 1.46 sec
Start 69: MdrunMultiSimTests
69/87 Test #69: MdrunMultiSimTests ............................. Passed 0.13 sec
Start 70: MdrunMultiSimReplexTests
70/87 Test #70: MdrunMultiSimReplexTests ....................... Passed 0.13 sec
Start 71: MdrunMultiSimReplexEquivalenceTests
71/87 Test #71: MdrunMultiSimReplexEquivalenceTests ............ Passed 0.02 sec
Start 72: MdrunMpi1RankPmeTests
72/87 Test #72: MdrunMpi1RankPmeTests .......................... Passed 1.19 sec
Start 73: MdrunMpi2RankPmeTests
73/87 Test #73: MdrunMpi2RankPmeTests .......................... Passed 1.81 sec
Start 74: MdrunMpiCoordinationBasicTestsOneRank
74/87 Test #74: MdrunMpiCoordinationBasicTestsOneRank .......... Passed 0.20 sec
Start 75: MdrunMpiCoordinationBasicTestsTwoRanks
75/87 Test #75: MdrunMpiCoordinationBasicTestsTwoRanks ......... Passed 0.21 sec
Start 76: MdrunMpiCoordinationCouplingTestsOneRank
76/87 Test #76: MdrunMpiCoordinationCouplingTestsOneRank ....... Passed 1.12 sec
Start 77: MdrunMpiCoordinationCouplingTestsTwoRanks
77/87 Test #77: MdrunMpiCoordinationCouplingTestsTwoRanks ...... Passed 1.55 sec
Start 78: MdrunMpiCoordinationConstraintsTestsOneRank
78/87 Test #78: MdrunMpiCoordinationConstraintsTestsOneRank .... Passed 21.67 sec
Start 79: MdrunMpiCoordinationConstraintsTestsTwoRanks
79/87 Test #79: MdrunMpiCoordinationConstraintsTestsTwoRanks ... Passed 21.81 sec
Start 80: MdrunFEPTests
80/87 Test #80: MdrunFEPTests .................................. Passed 1.00 sec
Start 81: MdrunPullTests
81/87 Test #81: MdrunPullTests ................................. Passed 1.35 sec
Start 82: MdrunSimulatorComparison
82/87 Test #82: MdrunSimulatorComparison ....................... Passed 0.03 sec
Start 83: MdrunVirtualSiteTests
83/87 Test #83: MdrunVirtualSiteTests .......................... Passed 0.37 sec
Start 84: regressiontests/complex
84/87 Test #84: regressiontests/complex ........................ Passed 61.78 sec
Start 85: regressiontests/freeenergy
85/87 Test #85: regressiontests/freeenergy ..................... Passed 22.99 sec
Start 86: regressiontests/rotation
86/87 Test #86: regressiontests/rotation ....................... Passed 7.15 sec
Start 87: regressiontests/essentialdynamics
87/87 Test #87: regressiontests/essentialdynamics .............. Passed 4.78 sec
100% tests passed, 0 tests failed out of 87
Label Time Summary:
GTest = 89.59 sec*proc (81 tests)
IntegrationTest = 26.54 sec*proc (25 tests)
MpiTest = 55.71 sec*proc (19 tests)
SlowTest = 58.20 sec*proc (13 tests)
UnitTest = 4.86 sec*proc (43 tests)
Total Test time (real) = 186.44 sec
>>> Completed testing sci-chemistry/gromacs-2022
@mgorny I still can reproduce the qa warning, since tests are executed, can you check what's wrong here? Thanks The ebuild inherits distutils-r1 but doesn't call its phase functions reliably. DISTUTILS_OPTIONAL should be used, most likely. lto_tinderbox has reproduced this issue with version 2022.3 - Updating summary. ci has reproduced this issue with version 2022.4 - Updating summary. Seems like its still false positive |