https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/ Issue: sci-chemistry/gromacs-2023.1 fails tests (MUSL-SYSTEM). Discovered on: amd64 (internal ref: tinderbox_musl) NOTE: (MUSL-SYSTEM) in the summary means that bug was found on a machine that runs MUSL libc but this bug MAY or MAY NOT BE related to musl.
Created attachment 863466 [details] build.log.xz build log and emerge --info (compressed because it exceeds attachment limit, use 'xzless' to read it)
Error(s) that match a know pattern: 84 - regressiontests/complex (Timeout) 85 - regressiontests/freeenergy (Timeout) -- Package 'mpi-cxx', required by 'virtual:world', not found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Could NOT find MPI (missing: MPI_CXX_FOUND CXX) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") FAILED: CMakeFiles/run-ctest-nophys /var/tmp/portage/sci-chemistry/gromacs-2023.1/work/gromacs-2023.1_float/CMakeFiles/run-ctest-nophys
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=08eb9870971040dff9daa6798be52aeca46d9146 commit 08eb9870971040dff9daa6798be52aeca46d9146 Author: Alexey Shvetsov <alexxy@gentoo.org> AuthorDate: 2024-11-23 17:41:33 +0000 Commit: Alexey Shvetsov <alexxy@gentoo.org> CommitDate: 2024-11-23 17:42:43 +0000 sci-chemistry/gromacs: drop 2020.7-r1, 2021.7-r1, 2022.6 Closes: https://bugs.gentoo.org/836855 Closes: https://bugs.gentoo.org/907989 Closes: https://bugs.gentoo.org/928852 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> sci-chemistry/gromacs/Manifest | 9 - .../gromacs/files/gromacs-2020-pytest.patch | 35 -- .../files/gromacs-2021-cstdint-include.patch | 12 - .../files/gromacs-2021-cuda-detection.patch | 339 ------------------- .../gromacs/files/gromacs-2021-musl-stdint.patch | 25 -- sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild | 351 -------------------- sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild | 360 --------------------- sci-chemistry/gromacs/gromacs-2022.6.ebuild | 337 ------------------- sci-chemistry/gromacs/metadata.xml | 1 - 9 files changed, 1469 deletions(-)
