| Summary: | sci-biology/mothur-1.27.0-r1 : classifyseqscommand.cpp:571:17: error: MPI_MODE_CREATE was not declared in this scope | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | CONFIRMED --- | ||
| Severity: | normal | CC: | mmokrejs |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 sci-biology:mothur-1.27.0-r1:20190323-225202.log temp.tbz2 |
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Created attachment 570574 [details]
emerge-info.txt
Created attachment 570576 [details]
emerge-history.txt
Created attachment 570578 [details]
environment
Created attachment 570580 [details]
etc.portage.tbz2
Created attachment 570582 [details]
sci-biology:mothur-1.27.0-r1:20190323-225202.log
Created attachment 570584 [details]
temp.tbz2
*** Bug 830079 has been marked as a duplicate of this bug. *** There used to be a newer version 1.36.1 in the tree: https://cgit.gentoo.org/proj/sci.git/tree/sci-biology/mothur?id=d209b24ac3b9de78f7048fb76467c42bad604263 *** Bug 920269 has been marked as a duplicate of this bug. *** |
mpicxx -O2 -pipe -march=native -DRELEASE_DATE="\"8/8/2012\"" -DVERSION="\"1.27.0\"" -DUSE_READLINE -DUSE_MPI -I. -DBIT_VERSION -c -o classifyseqscommand.o classifyseqscommand.cpp classifyseqscommand.cpp: In member function ‘virtual int ClassifySeqsCommand::execute()’: classifyseqscommand.cpp:571:17: error: ‘MPI_MODE_CREATE’ was not declared in this scope int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; ^~~~~~~~~~~~~~~ classifyseqscommand.cpp:571:17: note: suggested alternative: ‘MPI_MODE_NOPUT’ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.0-no-multilib_libressl_20190322-132156 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-7.3.1 [2] x86_64-pc-linux-gnu-8.3.0 * Available Python interpreters, in order of preference: [1] python3.6 [2] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) [3] ruby26 (with Rubygems) * Available Rust versions: [1] rust-1.32.0 * emerge -qpvO sci-biology/mothur [ebuild N ] sci-biology/mothur-1.27.0-r1 USE="mpi readline"