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Bug 597342

Summary: sci-libs/beagle-3.0.3 : Thread.cpp:95:68: error: throw will always call terminate() [-Werror=terminate]
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Gentoo Science Related Packages <sci>
Status: RESOLVED FIXED    
Severity: normal CC: sci
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 582084    
Attachments: config.log
emerge-history.txt
environment
sci-libs:beagle-3.0.3:20161017-073435.log

Description Toralf Förster gentoo-dev 2016-10-17 07:56:10 UTC
In file included from libpacc-threading.cpp:7:0:
Thread.cpp: In destructor 'virtual PACC::Threading::Thread::~Thread()':
Thread.cpp:95:68: error: throw will always call terminate() [-Werror=terminate]
    throw Exception(ErrNo, "Thread::~Thread() unable to join thread");
                                                                    ^
Thread.cpp:95:68: note: in C++11 destructors default to noexcept


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-plasma-unstable_20161008-155153) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------
  USE flags ...

  ... in make.conf:
USE="  pax_kernel xtpax -cdinstall -oci8 -bindist ssp alsa apache cairo cdda -clang compat consolekit dec_av2 ecc egl extra git gnomecanvas -gnutls graphtft gui help lapack latex libvirtd mbox melt minimal minizip mod modplug mpeg mpeg3 mpi multimedia multitarget mysql opencv openmpi osc snmp source -sslv2 swscale system-icu -system-libvpx system-llvm system-sqlite -tcpd tk -usb v4l2 -vim xetex xml xslt -zip"

  ... in /etc/portage/package.use/*:
  mail-mta/ssmtp      mta ssl
  net-misc/wget       ssl
  app-editors/xemacs  -nopie
  app-crypt/pinentry  -gtk -qt4
  app-editors/emacs   -dbus -gtk -gtk3 -ssl -svg
  app-text/xmlto      -latex
  dev-libs/boehm-gc   threads
  dev-libs/libpcre    pcre16
  dev-lang/python     threads
  dev-qt/qtgui        egl eglfs
  dev-util/cmake      -qt4 -qt5
  dev-vcs/git         -gtk -perl
  gnome-base/librsvg  -tools
  media-libs/mesa     -vaapi
  net-nds/openldap    -sasl
  sys-apps/kmod       tools
  sys-libs/ncurses    -gpm
  x11-libs/gtk+       -cups
  net-misc/iputils -caps -filecaps

  entries in /etc/portage/package.unmask/*:
  ~sys-apps/sandbox-2.11
  sys-devel/gcc:6.2.0
  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-4.9.3
 [2] x86_64-pc-linux-gnu-6.2.0 *
llvm-config --version:
3.8.1

Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python3.5 (fallback)
  [3]   python2.7 (fallback)
  [4]   pypy3 (fallback)
  [5]   pypy (fallback)
Available Ruby profiles:
  (none found)
  -----------------------------------------------------------------

Portage 2.3.2 (python 3.4.5-final-0, default/linux/amd64/13.0/desktop/plasma, gcc-6.2.0, glibc-2.23-r2, 4.7.7-hardened x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.7.7-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3
KiB Mem:    65285480 total,   3749948 free
KiB Swap:   67108860 total,  67091580 free
Timestamp of repository gentoo: Mon, 17 Oct 2016 06:10:09 +0000
sh bash 4.4-r1
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.4-r1::gentoo
dev-lang/perl:            5.24.0-r1::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo, 3.5.2::gentoo
dev-util/cmake:           3.6.2::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.3::gentoo
sys-apps/openrc:          0.22.2::gentoo
sys-apps/sandbox:         2.11-r2::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo, 2.26.1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 6.2.0-r1::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/tomoyo/conf /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-Werror=terminate -march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 apache berkdb bluetooth branding bzip2 cairo cdda cdr cli compat consolekit cracklib crypt cups cxx dbus dec_av2 declarative dri dts dvd dvdr ecc egl emboss encode exif extra fam firefox flac fortran gdbm gif git glamor gnomecanvas gpm graphtft gtk gui help iconv ipv6 jpeg kde kipi lapack latex lcms ldap libnotify libvirtd mad mbox melt minimal minizip mmx mmxext mng mod modplug modules mp3 mp4 mpeg mpeg3 mpi multilib multimedia multitarget mysql ncurses nls nptl ogg opencv opengl openmp openmpi osc pam pango pax_kernel pcre pdf phonon plasma png policykit ppds qml qt3support qt4 qt5 readline sdl seccomp semantic-desktop session snmp source spell sse sse2 ssl ssp startup-notification svg swscale system-icu system-llvm system-sqlite tiff tk truetype udev udisks unicode upower v4l2 vorbis widgets wxwidgets x264 xattr xcb xcomposite xetex xinerama xml xscreensaver xslt xtpax xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="dgo en-US es ga ka mni sl ur-PK" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-10-17 07:56:19 UTC
Created attachment 450538 [details]
config.log
Comment 2 Toralf Förster gentoo-dev 2016-10-17 07:56:22 UTC
Created attachment 450540 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2016-10-17 07:56:26 UTC
Created attachment 450542 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2016-10-17 07:56:29 UTC
Created attachment 450544 [details]
sci-libs:beagle-3.0.3:20161017-073435.log
Comment 5 David Seifert gentoo-dev 2016-10-20 23:40:01 UTC
commit b066efd6375e70a8f412041473f32dc954e484b8
Author: David Seifert <soap@gentoo.org>
Date:   Fri Oct 21 01:36:49 2016 +0200

    sci-libs/beagle: Allow for compiling with GCC 6
    
    Gentoo-bug: 597342
    * EAPI=6
    * Fix patches to be -p1 compliant