* Package: sci-libs/beagle-3.0.3 * Repository: gentoo * Maintainer: sci@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking beagle-3.0.3.tar.gz to /var/tmp/portage/sci-libs/beagle-3.0.3/work >>> Source unpacked in /var/tmp/portage/sci-libs/beagle-3.0.3/work >>> Preparing source in /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3 ... * Applying beagle-3.0.3-gcc43.patch ... [ ok ] * Applying beagle-3.0.3-gcc47.patch ... [ ok ] * Running elibtoolize in: beagle-3.0.3/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5.26 patch ... * Running elibtoolize in: beagle-3.0.3/examples/Coev/coev_symbreg/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/Coev/coev_symbreg/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/Coev/ipd/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/Coev/ipd/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/knapsack/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/knapsack/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/maxfct/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/maxfct/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/maxfctes/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/maxfctes/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/maxfctfloat/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/maxfctfloat/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/onemax/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/onemax/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/tsp/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/tsp/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/zeromin/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GA/zeromin/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GP/parity/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GP/parity/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GP/spambase/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GP/spambase/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GP/symbreg/ * Applying target-nm/2.4.2 patch ... * Running elibtoolize in: beagle-3.0.3/examples/GP/symbreg/config/ * Applying install-sh/1.5.6 patch ... * Applying portage/1.5.10 patch ... * Applying max_cmd_len/1.5.20 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/1.5 patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3" * econf: updating beagle-3.0.3/examples/GA/maxfct/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GA/maxfct/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/GA/maxfctes/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GA/maxfctes/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/GA/tsp/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GA/tsp/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/GA/onemax/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GA/onemax/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/GA/zeromin/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GA/zeromin/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/GA/maxfctfloat/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GA/maxfctfloat/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/GA/knapsack/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GA/knapsack/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/Coev/ipd/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/Coev/ipd/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/Coev/coev_symbreg/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/Coev/coev_symbreg/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/GP/parity/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GP/parity/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/GP/spambase/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GP/spambase/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/examples/GP/symbreg/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/examples/GP/symbreg/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating beagle-3.0.3/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating beagle-3.0.3/config/config.sub with /usr/share/gnuconfig/config.sub /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64 --docdir=/usr/share/doc/beagle-3.0.3 --enable-shared --disable-static --enable-optimization checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gawk... (cached) gawk checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of x86_64-pc-linux-gnu-g++... none checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking dependency style of x86_64-pc-linux-gnu-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/x86_64-pc-linux-gnu-nm -B checking how to recognize dependent libraries... pass_all checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E checking for x86_64-pc-linux-gnu-g77... no checking for x86_64-pc-linux-gnu-xlf... no checking for x86_64-pc-linux-gnu-f77... no checking for x86_64-pc-linux-gnu-frt... no checking for x86_64-pc-linux-gnu-pgf77... no checking for x86_64-pc-linux-gnu-cf77... no checking for x86_64-pc-linux-gnu-fort77... no checking for x86_64-pc-linux-gnu-fl32... no checking for x86_64-pc-linux-gnu-af77... no checking for x86_64-pc-linux-gnu-xlf90... no checking for x86_64-pc-linux-gnu-f90... no checking for x86_64-pc-linux-gnu-pgf90... no checking for x86_64-pc-linux-gnu-pghpf... no checking for x86_64-pc-linux-gnu-epcf90... no checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes checking the maximum length of command line arguments... 1572864 checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok checking for objdir... .libs checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ANSI C header files... (cached) yes checking whether the compiler recognizes bool as a built-in type... yes checking for long long int... yes checking whether the compiler supports isfinite macro... no checking whether the compiler supports basic templates... yes checking whether the compiler recognizes typename... yes checking whether the compiler supports function matching with argument types which are template scope-qualified... yes checking whether the compiler supports default template parameters... yes checking whether the compiler supports template-qualified base class specifiers... no checking whether the compiler supports template-qualified return types... yes checking whether the compiler supports const_cast<>... yes checking whether the compiler supports reinterpret_cast<>... yes checking whether the compiler supports static_cast<>... yes checking whether the compiler supports dynamic_cast<>... yes checking whether the compiler supports exceptions... yes checking whether the compiler supports the explicit keyword... yes checking whether the compiler implements namespaces... yes checking whether the compiler supports Run-Time Type Identification... yes checking whether the compiler supports ISO C++ standard library... yes checking whether the compiler supports Standard Template Library... yes checking whether the compiler has numeric_limits... yes checking whether the compiler has stringstream... yes checking for /dev/urandom... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... x86_64-pc-linux-gnu-gcc checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for inflateEnd in -lz... (cached) yes checking zlib in /usr... ok configure: creating ./config.status config.status: creating Makefile config.status: creating PACC/Makefile config.status: creating PACC/Math/Makefile config.status: creating PACC/SVG/Makefile config.status: creating PACC/Socket/Makefile config.status: creating PACC/Threading/Makefile config.status: creating PACC/Util/Makefile config.status: creating PACC/XML/Makefile config.status: creating beagle/Makefile config.status: creating beagle/include/Makefile config.status: creating beagle/include/beagle/Makefile config.status: creating beagle/src/Makefile config.status: creating beagle/GA/Makefile config.status: creating beagle/GA/include/Makefile config.status: creating beagle/GA/include/beagle/Makefile config.status: creating beagle/GA/include/beagle/GA/Makefile config.status: creating beagle/GA/src/Makefile config.status: creating beagle/GP/Makefile config.status: creating beagle/GP/include/Makefile config.status: creating beagle/GP/include/beagle/Makefile config.status: creating beagle/GP/include/beagle/GP/Makefile config.status: creating beagle/GP/src/Makefile config.status: creating beagle/Coev/Makefile config.status: creating beagle/Coev/include/Makefile config.status: creating beagle/Coev/include/beagle/Makefile config.status: creating beagle/Coev/include/beagle/Coev/Makefile config.status: creating beagle/Coev/src/Makefile config.status: creating tests/Makefile config.status: creating tests/Common/Makefile config.status: creating tests/Exception/Makefile config.status: creating tests/GA/Makefile config.status: creating tests/GA/optfct/Makefile config.status: creating tests/GP/Makefile config.status: creating tests/GP/FitnessTestGPIndividual/Makefile config.status: creating tests/GP/ReadGPIndividual/Makefile config.status: creating tests/GP/WriteRandomGPIndividual/Makefile config.status: creating tests/LinGP/Makefile config.status: creating tests/LinGP/include/Makefile config.status: creating tests/LinGP/include/beagle/Makefile config.status: creating tests/LinGP/include/beagle/LinGP/Makefile config.status: creating tests/LinGP/src/Makefile config.status: creating tests/Roulette/Makefile config.status: creating tests/Thread/Makefile config.status: creating tests/TransportTCPIPOp/Makefile config.status: creating config/config-h config.status: executing beagle/include/beagle/config.hpp commands config.status: creating beagle/include/beagle/config.hpp - prefix BEAGLE for config/config-h defines config.status: executing depfiles commands >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3" make -j1 Making all in PACC make[1]: Entering directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC' Making all in Util make[2]: Entering directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/Util' rm -f libpacc-util.cpp echo "// Generated automatically by make" > libpacc-util.cpp echo >> libpacc-util.cpp echo Date.cpp Randomizer.cpp SignalHandler.cpp Timer.cpp Tokenizer.cpp | sed -e 's/ *\([a-zA-Z0-9_\-]*\.cpp\)/\#include \"\1\"=/g' | tr '=' '\n' >> libpacc-util.cpp /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -Werror=terminate -march=native -O2 -pipe -pthread -c -o libpacc-util.lo libpacc-util.cpp mkdir .libs x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -Werror=terminate -march=native -O2 -pipe -pthread -c libpacc-util.cpp -fPIC -DPIC -o .libs/libpacc-util.o /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -Werror=terminate -march=native -O2 -pipe -pthread -Wl,-O1 -Wl,--as-needed -L/usr/lib -o libpacc-util.la -rpath /usr/lib64 -no-undefined -release 1.3.1b libpacc-util.lo -lz x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/crtbeginS.o .libs/libpacc-util.o -Wl,--as-needed -L/usr/lib -lz -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64/crtn.o -march=native -pthread -Wl,-O1 -Wl,-soname -Wl,libpacc-util-1.3.1b.so -o .libs/libpacc-util-1.3.1b.so (cd .libs && rm -f libpacc-util.so && ln -s libpacc-util-1.3.1b.so libpacc-util.so) creating libpacc-util.la (cd .libs && rm -f libpacc-util.la && ln -s ../libpacc-util.la libpacc-util.la) make[2]: Leaving directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/Util' Making all in XML make[2]: Entering directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/XML' rm -f libpacc-xml.cpp echo "// Generated automatically by make" > libpacc-xml.cpp echo >> libpacc-xml.cpp echo Document.cpp Finder.cpp Node.cpp Streamer.cpp | sed -e 's/ *\([a-zA-Z0-9_\-]*\.cpp\)/\#include \"\1\"=/g' | tr '=' '\n' >> libpacc-xml.cpp /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -Werror=terminate -march=native -O2 -pipe -pthread -c -o libpacc-xml.lo libpacc-xml.cpp mkdir .libs x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -Werror=terminate -march=native -O2 -pipe -pthread -c libpacc-xml.cpp -fPIC -DPIC -o .libs/libpacc-xml.o /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -Werror=terminate -march=native -O2 -pipe -pthread -Wl,-O1 -Wl,--as-needed -L/usr/lib -o libpacc-xml.la -rpath /usr/lib64 -no-undefined -release 1.3.1b libpacc-xml.lo ../../PACC/Util/libpacc-util.la -lz x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/crtbeginS.o .libs/libpacc-xml.o -Wl,--rpath -Wl,/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/Util/.libs -Wl,--as-needed -L/usr/lib ../../PACC/Util/.libs/libpacc-util.so -lz -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64/crtn.o -march=native -pthread -Wl,-O1 -Wl,-soname -Wl,libpacc-xml-1.3.1b.so -o .libs/libpacc-xml-1.3.1b.so (cd .libs && rm -f libpacc-xml.so && ln -s libpacc-xml-1.3.1b.so libpacc-xml.so) creating libpacc-xml.la (cd .libs && rm -f libpacc-xml.la && ln -s ../libpacc-xml.la libpacc-xml.la) make[2]: Leaving directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/XML' Making all in Math make[2]: Entering directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/Math' rm -f libpacc-math.cpp echo "// Generated automatically by make" > libpacc-math.cpp echo >> libpacc-math.cpp echo Matrix.cpp QRandSequencer.cpp Vector.cpp | sed -e 's/ *\([a-zA-Z0-9_\-]*\.cpp\)/\#include \"\1\"=/g' | tr '=' '\n' >> libpacc-math.cpp /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -Werror=terminate -march=native -O2 -pipe -pthread -c -o libpacc-math.lo libpacc-math.cpp mkdir .libs x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -Werror=terminate -march=native -O2 -pipe -pthread -c libpacc-math.cpp -fPIC -DPIC -o .libs/libpacc-math.o /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -Werror=terminate -march=native -O2 -pipe -pthread -Wl,-O1 -Wl,--as-needed -L/usr/lib -o libpacc-math.la -rpath /usr/lib64 -no-undefined -release 1.3.1b libpacc-math.lo ../../PACC/XML/libpacc-xml.la ../../PACC/Util/libpacc-util.la -lz x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/crtbeginS.o .libs/libpacc-math.o -Wl,--rpath -Wl,/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/XML/.libs -Wl,--rpath -Wl,/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/Util/.libs -Wl,--as-needed -L/usr/lib ../../PACC/XML/.libs/libpacc-xml.so ../../PACC/Util/.libs/libpacc-util.so -lz -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../lib64/crtn.o -march=native -pthread -Wl,-O1 -Wl,-soname -Wl,libpacc-math-1.3.1b.so -o .libs/libpacc-math-1.3.1b.so (cd .libs && rm -f libpacc-math.so && ln -s libpacc-math-1.3.1b.so libpacc-math.so) creating libpacc-math.la (cd .libs && rm -f libpacc-math.la && ln -s ../libpacc-math.la libpacc-math.la) make[2]: Leaving directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/Math' Making all in Threading make[2]: Entering directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/Threading' rm -f libpacc-threading.cpp echo "// Generated automatically by make" > libpacc-threading.cpp echo >> libpacc-threading.cpp echo Condition.cpp Exception.cpp Mutex.cpp Semaphore.cpp Thread.cpp ThreadPool.cpp | sed -e 's/ *\([a-zA-Z0-9_\-]*\.cpp\)/\#include \"\1\"=/g' | tr '=' '\n' >> libpacc-threading.cpp /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -Werror=terminate -march=native -O2 -pipe -pthread -c -o libpacc-threading.lo libpacc-threading.cpp mkdir .libs x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../../config -I../../PACC -I/usr/include -DPACC_ZLIB -Werror=terminate -march=native -O2 -pipe -pthread -c libpacc-threading.cpp -fPIC -DPIC -o .libs/libpacc-threading.o In file included from libpacc-threading.cpp:7:0: Thread.cpp: In destructor 'virtual PACC::Threading::Thread::~Thread()': Thread.cpp:95:68: error: throw will always call terminate() [-Werror=terminate] throw Exception(ErrNo, "Thread::~Thread() unable to join thread"); ^ Thread.cpp:95:68: note: in C++11 destructors default to noexcept cc1plus: some warnings being treated as errors make[2]: *** [Makefile:348: libpacc-threading.lo] Error 1 make[2]: Leaving directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC/Threading' make[1]: *** [Makefile:268: all-recursive] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/PACC' make: *** [Makefile:770: all-recursive] Error 1 * ERROR: sci-libs/beagle-3.0.3::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-libs/beagle-3.0.3::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-libs/beagle-3.0.3::gentoo'`. * The complete build log is located at '/var/log/portage/sci-libs:beagle-3.0.3:20161017-073435.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/beagle-3.0.3/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/beagle-3.0.3/temp/environment'. * Working directory: '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3' * S: '/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3'