This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Open BEAGLE configure 3.0.3, which was generated by GNU Autoconf 2.61. Invocation command line was $ /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64 --docdir=/usr/share/doc/beagle-3.0.3 --enable-shared --disable-static --enable-optimization ## --------- ## ## Platform. ## ## --------- ## hostname = mr-fox uname -m = x86_64 uname -r = 4.7.7-hardened uname -s = Linux uname -v = #1 SMP Tue Oct 11 19:45:21 CEST 2016 /usr/bin/uname -p = Intel(R) Core(TM) i7-3930K CPU @ 3.20GHz /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib/portage/python3.4/ebuild-helpers/xattr PATH: /usr/lib/portage/python3.4/ebuild-helpers PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /opt/bin PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 PATH: /usr/bin/cdsclient PATH: /opt/ekopath/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1996: checking for a BSD-compatible install configure:2052: result: /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c configure:2063: checking whether build environment is sane configure:2106: result: yes configure:2163: checking for gawk configure:2179: found /usr/bin/gawk configure:2190: result: gawk configure:2201: checking whether make sets $(MAKE) configure:2222: result: yes configure:2412: checking for gawk configure:2439: result: gawk configure:2464: checking for x86_64-pc-linux-gnu-g++ configure:2480: found /usr/bin/x86_64-pc-linux-gnu-g++ configure:2491: result: x86_64-pc-linux-gnu-g++ configure:2566: checking for C++ compiler version configure:2573: x86_64-pc-linux-gnu-g++ --version >&5 x86_64-pc-linux-gnu-g++ (Gentoo 6.2.0-r1 p1.1) 6.2.0 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2576: $? = 0 configure:2583: x86_64-pc-linux-gnu-g++ -v >&5 Using built-in specs. COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --disable-libgcj --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --enable-default-ssp Thread model: posix gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) configure:2586: $? = 0 configure:2593: x86_64-pc-linux-gnu-g++ -V >&5 x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-V' x86_64-pc-linux-gnu-g++: fatal error: no input files compilation terminated. configure:2596: $? = 1 configure:2619: checking for C++ compiler default output file name configure:2646: x86_64-pc-linux-gnu-g++ -Werror=terminate -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:2649: $? = 0 configure:2687: result: a.out configure:2704: checking whether the C++ compiler works configure:2714: ./a.out configure:2717: $? = 0 configure:2734: result: yes configure:2741: checking whether we are cross compiling configure:2743: result: no configure:2746: checking for suffix of executables configure:2753: x86_64-pc-linux-gnu-g++ -o conftest -Werror=terminate -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:2756: $? = 0 configure:2780: result: configure:2786: checking for suffix of object files configure:2812: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:2815: $? = 0 configure:2838: result: o configure:2842: checking whether we are using the GNU C++ compiler configure:2871: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:2877: $? = 0 configure:2894: result: yes configure:2899: checking whether x86_64-pc-linux-gnu-g++ accepts -g configure:2929: x86_64-pc-linux-gnu-g++ -c -g conftest.cpp >&5 configure:2935: $? = 0 configure:3034: result: yes configure:3068: checking for style of include used by make configure:3096: result: GNU configure:3124: checking dependency style of x86_64-pc-linux-gnu-g++ configure:3214: result: none configure:3236: checking how to run the C++ preprocessor configure:3272: x86_64-pc-linux-gnu-g++ -E conftest.cpp configure:3278: $? = 0 configure:3309: x86_64-pc-linux-gnu-g++ -E conftest.cpp conftest.cpp:10:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:3315: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | /* end confdefs.h. */ | #include configure:3348: result: x86_64-pc-linux-gnu-g++ -E configure:3377: x86_64-pc-linux-gnu-g++ -E conftest.cpp configure:3383: $? = 0 configure:3414: x86_64-pc-linux-gnu-g++ -E conftest.cpp conftest.cpp:10:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:3420: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | /* end confdefs.h. */ | #include configure:3470: checking for a BSD-compatible install configure:3526: result: /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c configure:3537: checking whether ln -s works configure:3541: result: yes configure:3626: checking build system type configure:3644: result: x86_64-pc-linux-gnu configure:3666: checking host system type configure:3681: result: x86_64-pc-linux-gnu configure:3711: checking for x86_64-pc-linux-gnu-gcc configure:3727: found /usr/bin/x86_64-pc-linux-gnu-gcc configure:3738: result: x86_64-pc-linux-gnu-gcc configure:4016: checking for C compiler version configure:4023: x86_64-pc-linux-gnu-gcc --version >&5 x86_64-pc-linux-gnu-gcc (Gentoo 6.2.0-r1 p1.1) 6.2.0 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4026: $? = 0 configure:4033: x86_64-pc-linux-gnu-gcc -v >&5 Using built-in specs. COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --disable-libgcj --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --enable-default-ssp Thread model: posix gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) configure:4036: $? = 0 configure:4043: x86_64-pc-linux-gnu-gcc -V >&5 x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-V' x86_64-pc-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:4046: $? = 1 configure:4049: checking whether we are using the GNU C compiler configure:4078: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:4084: $? = 0 configure:4101: result: yes configure:4106: checking whether x86_64-pc-linux-gnu-gcc accepts -g configure:4136: x86_64-pc-linux-gnu-gcc -c -g conftest.c >&5 configure:4142: $? = 0 configure:4241: result: yes configure:4258: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89 configure:4332: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:4338: $? = 0 configure:4361: result: none needed configure:4381: checking dependency style of x86_64-pc-linux-gnu-gcc configure:4471: result: none configure:4488: checking for a sed that does not truncate output configure:4544: result: /bin/sed configure:4547: checking for grep that handles long lines and -e configure:4621: result: /bin/grep configure:4626: checking for egrep configure:4704: result: /bin/grep -E configure:4720: checking for ld used by x86_64-pc-linux-gnu-gcc configure:4787: result: /usr/x86_64-pc-linux-gnu/bin/ld configure:4796: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld configure:4811: result: yes configure:4816: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files configure:4823: result: -r configure:4841: checking for BSD-compatible nm configure:4890: result: /usr/bin/x86_64-pc-linux-gnu-nm -B configure:4894: checking how to recognize dependent libraries configure:5080: result: pass_all configure:5169: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5172: $? = 0 configure:5321: checking how to run the C preprocessor configure:5361: x86_64-pc-linux-gnu-gcc -E conftest.c configure:5367: $? = 0 configure:5398: x86_64-pc-linux-gnu-gcc -E conftest.c conftest.c:10:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:5404: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | /* end confdefs.h. */ | #include configure:5437: result: x86_64-pc-linux-gnu-gcc -E configure:5466: x86_64-pc-linux-gnu-gcc -E conftest.c configure:5472: $? = 0 configure:5503: x86_64-pc-linux-gnu-gcc -E conftest.c conftest.c:10:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:5509: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | /* end confdefs.h. */ | #include configure:5547: checking for ANSI C header files configure:5577: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5583: $? = 0 configure:5682: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 configure:5685: $? = 0 configure:5691: ./conftest configure:5694: $? = 0 configure:5711: result: yes configure:5735: checking for sys/types.h configure:5756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5762: $? = 0 configure:5778: result: yes configure:5735: checking for sys/stat.h configure:5756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5762: $? = 0 configure:5778: result: yes configure:5735: checking for stdlib.h configure:5756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5762: $? = 0 configure:5778: result: yes configure:5735: checking for string.h configure:5756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5762: $? = 0 configure:5778: result: yes configure:5735: checking for memory.h configure:5756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5762: $? = 0 configure:5778: result: yes configure:5735: checking for strings.h configure:5756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5762: $? = 0 configure:5778: result: yes configure:5735: checking for inttypes.h configure:5756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5762: $? = 0 configure:5778: result: yes configure:5735: checking for stdint.h configure:5756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5762: $? = 0 configure:5778: result: yes configure:5735: checking for unistd.h configure:5756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5762: $? = 0 configure:5778: result: yes configure:5805: checking dlfcn.h usability configure:5822: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:5828: $? = 0 configure:5842: result: yes configure:5846: checking dlfcn.h presence configure:5861: x86_64-pc-linux-gnu-gcc -E conftest.c configure:5867: $? = 0 configure:5881: result: yes configure:5914: checking for dlfcn.h configure:5922: result: yes configure:5945: checking how to run the C++ preprocessor configure:6057: result: x86_64-pc-linux-gnu-g++ -E configure:6086: x86_64-pc-linux-gnu-g++ -E conftest.cpp configure:6092: $? = 0 configure:6123: x86_64-pc-linux-gnu-g++ -E conftest.cpp conftest.cpp:21:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:6129: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:6178: checking for x86_64-pc-linux-gnu-g77 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-xlf configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-f77 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-frt configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-pgf77 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-cf77 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-fort77 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-fl32 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-af77 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-xlf90 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-f90 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-pgf90 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-pghpf configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-epcf90 configure:6208: result: no configure:6178: checking for x86_64-pc-linux-gnu-gfortran configure:6194: found /usr/bin/x86_64-pc-linux-gnu-gfortran configure:6205: result: x86_64-pc-linux-gnu-gfortran configure:6279: checking for Fortran 77 compiler version configure:6286: x86_64-pc-linux-gnu-gfortran --version >&5 GNU Fortran (Gentoo 6.2.0-r1 p1.1) 6.2.0 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6289: $? = 0 configure:6296: x86_64-pc-linux-gnu-gfortran -v >&5 Using built-in specs. COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-gfortran COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --disable-libgcj --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --enable-default-ssp Thread model: posix gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) configure:6299: $? = 0 configure:6306: x86_64-pc-linux-gnu-gfortran -V >&5 x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option '-V' x86_64-pc-linux-gnu-gfortran: fatal error: no input files compilation terminated. configure:6309: $? = 1 configure:6317: checking whether we are using the GNU Fortran 77 compiler configure:6336: x86_64-pc-linux-gnu-gfortran -c -O2 -pipe conftest.F >&5 configure:6342: $? = 0 configure:6359: result: yes configure:6365: checking whether x86_64-pc-linux-gnu-gfortran accepts -g configure:6382: x86_64-pc-linux-gnu-gfortran -c -g conftest.f >&5 configure:6388: $? = 0 configure:6404: result: yes configure:6434: checking the maximum length of command line arguments configure:6546: result: 1572864 configure:6558: checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object configure:6663: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:6666: $? = 0 configure:6670: /usr/bin/x86_64-pc-linux-gnu-nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:6673: $? = 0 configure:6725: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c conftstm.o >&5 configure:6728: $? = 0 configure:6766: result: ok configure:6770: checking for objdir configure:6785: result: .libs configure:6837: checking for x86_64-pc-linux-gnu-ar configure:6853: found /usr/bin/x86_64-pc-linux-gnu-ar configure:6864: result: x86_64-pc-linux-gnu-ar configure:6933: checking for x86_64-pc-linux-gnu-ranlib configure:6949: found /usr/bin/x86_64-pc-linux-gnu-ranlib configure:6960: result: x86_64-pc-linux-gnu-ranlib configure:7029: checking for x86_64-pc-linux-gnu-strip configure:7045: found /usr/bin/x86_64-pc-linux-gnu-strip configure:7056: result: x86_64-pc-linux-gnu-strip configure:7382: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions configure:7400: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:7404: $? = 0 configure:7417: result: no configure:7432: checking for x86_64-pc-linux-gnu-gcc option to produce PIC configure:7664: result: -fPIC configure:7672: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works configure:7690: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -fPIC -DPIC conftest.c >&5 configure:7694: $? = 0 configure:7707: result: yes configure:7735: checking if x86_64-pc-linux-gnu-gcc static flag -static works configure:7763: result: yes configure:7773: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o configure:7794: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -o out/conftest2.o conftest.c >&5 configure:7798: $? = 0 configure:7820: result: yes configure:7846: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:8827: result: yes configure:8848: checking whether -lc should be explicitly linked in configure:8853: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8856: $? = 0 configure:8871: x86_64-pc-linux-gnu-gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| grep -lc \>/dev/null 2\>\&1 configure:8874: $? = 0 configure:8886: result: no configure:8894: checking dynamic linker characteristics configure:9508: result: GNU/Linux ld.so configure:9517: checking how to hardcode library paths into programs configure:9542: result: immediate configure:9556: checking whether stripping libraries is possible configure:9561: result: yes configure:10363: checking if libtool supports shared libraries configure:10365: result: yes configure:10368: checking whether to build shared libraries configure:10389: result: yes configure:10392: checking whether to build static libraries configure:10396: result: no configure:10489: creating libtool configure:11077: checking for ld used by x86_64-pc-linux-gnu-g++ configure:11144: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 configure:11153: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld configure:11168: result: yes configure:11219: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:12193: result: yes configure:12211: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:12214: $? = 0 configure:12366: checking for x86_64-pc-linux-gnu-g++ option to produce PIC configure:12650: result: -fPIC configure:12658: checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works configure:12676: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe -fPIC -DPIC conftest.cpp >&5 configure:12680: $? = 0 configure:12693: result: yes configure:12721: checking if x86_64-pc-linux-gnu-g++ static flag -static works configure:12749: result: yes configure:12759: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o configure:12780: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe -o out/conftest2.o conftest.cpp >&5 configure:12784: $? = 0 configure:12806: result: yes configure:12832: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:12860: result: yes configure:12927: checking dynamic linker characteristics configure:13489: result: GNU/Linux ld.so configure:13498: checking how to hardcode library paths into programs configure:13523: result: immediate configure:14057: checking if libtool supports shared libraries configure:14059: result: yes configure:14062: checking whether to build shared libraries configure:14082: result: yes configure:14085: checking whether to build static libraries configure:14089: result: no configure:14099: checking for x86_64-pc-linux-gnu-gfortran option to produce PIC configure:14331: result: -fPIC configure:14339: checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works configure:14357: x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fPIC conftest.f >&5 configure:14361: $? = 0 configure:14374: result: yes configure:14402: checking if x86_64-pc-linux-gnu-gfortran static flag -static works configure:14430: result: yes configure:14440: checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o configure:14461: x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -o out/conftest2.o conftest.f >&5 configure:14465: $? = 0 configure:14487: result: yes configure:14513: checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:15474: result: yes configure:15541: checking dynamic linker characteristics configure:16103: result: GNU/Linux ld.so configure:16112: checking how to hardcode library paths into programs configure:16137: result: immediate configure:19815: checking for ANSI C header files configure:19979: result: yes configure:19990: checking whether the compiler recognizes bool as a built-in type configure:20027: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20033: $? = 0 configure:20055: result: yes configure:20065: checking for long long int configure:20099: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20105: $? = 0 configure:20121: result: yes configure:20131: checking whether the compiler supports isfinite macro configure:20165: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 conftest.cpp:26:0: warning: "_GNU_SOURCE" redefined #define _GNU_SOURCE :0:0: note: this is the location of the previous definition conftest.cpp: In function 'int main()': conftest.cpp:31:31: error: 'isfinite' was not declared in this scope double d=0; int n = isfinite(d); ^ conftest.cpp:31:31: note: suggested alternative: In file included from conftest.cpp:27:0: /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/cmath:605:5: note: 'std::isfinite' isfinite(_Tp __x) ^~~~~~~~ configure:20171: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define NDEBUG | #define FAST_COMPILATION | #define STDC_HEADERS 1 | #define HAVE_BOOL | #define HAVE_LONG_LONG | /* end confdefs.h. */ | #define _GNU_SOURCE | #include | int | main () | { | double d=0; int n = isfinite(d); | ; | return 0; | } configure:20193: result: no configure:20203: checking whether the compiler supports basic templates configure:20238: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20244: $? = 0 configure:20266: result: yes configure:20276: checking whether the compiler recognizes typename configure:20309: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20315: $? = 0 configure:20337: result: yes configure:20347: checking whether the compiler supports function matching with argument types which are template scope-qualified configure:20388: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20394: $? = 0 configure:20416: result: yes configure:20426: checking whether the compiler supports default template parameters configure:20461: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20467: $? = 0 configure:20489: result: yes configure:20499: checking whether the compiler supports template-qualified base class specifiers configure:20545: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 conftest.cpp:37:26: error: an explicit specialization must be preceded by 'template <>' struct base_trait { typedef Base2 base; }; ^~~~~~~~~~~~~~~~~ conftest.cpp: In member function 'int Weird::g() const': conftest.cpp:41:30: error: there are no arguments to 'f' that depend on a template parameter, so a declaration of 'f' must be available [-fpermissive] int g () const { return f (); } ^ conftest.cpp:41:30: note: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated) configure:20551: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define NDEBUG | #define FAST_COMPILATION | #define STDC_HEADERS 1 | #define HAVE_BOOL | #define HAVE_LONG_LONG | #define HAVE_TEMPLATES | #define HAVE_TYPENAME | #define HAVE_TEMPLATE_SCOPED_ARGUMENT_MATCHING | #define HAVE_DEFAULT_TEMPLATE_PARAMETERS | /* end confdefs.h. */ | | #ifndef HAVE_TYPENAME | #define typename | #endif | class Base1 { public : int f () const { return 1; } }; | class Base2 { public : int f () const { return 0; } }; | template struct base_trait { typedef Base1 base; }; | struct base_trait { typedef Base2 base; }; | template class Weird : public base_trait::base | { public : | typedef typename base_trait::base base; | int g () const { return f (); } | }; | int | main () | { | Weird z; return z.g (); | ; | return 0; | } configure:20573: result: no configure:20583: checking whether the compiler supports template-qualified return types configure:20627: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20633: $? = 0 configure:20655: result: yes configure:20665: checking whether the compiler supports const_cast<> configure:20698: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20704: $? = 0 configure:20726: result: yes configure:20736: checking whether the compiler supports reinterpret_cast<> configure:20774: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20780: $? = 0 configure:20802: result: yes configure:20812: checking whether the compiler supports static_cast<> configure:20849: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20855: $? = 0 configure:20877: result: yes configure:20887: checking whether the compiler supports dynamic_cast<> configure:20923: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:20929: $? = 0 configure:20951: result: yes configure:20961: checking whether the compiler supports exceptions configure:20994: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:21000: $? = 0 configure:21022: result: yes configure:21032: checking whether the compiler supports the explicit keyword configure:21065: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:21071: $? = 0 configure:21093: result: yes configure:21103: checking whether the compiler implements namespaces configure:21136: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:21142: $? = 0 configure:21164: result: yes configure:21174: checking whether the compiler supports Run-Time Type Identification configure:21219: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:21225: $? = 0 configure:21247: result: yes configure:21257: checking whether the compiler supports ISO C++ standard library configure:21297: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:21303: $? = 0 configure:21325: result: yes configure:21335: checking whether the compiler supports Standard Template Library configure:21374: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:21380: $? = 0 configure:21402: result: yes configure:21412: checking whether the compiler has numeric_limits configure:21449: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:21455: $? = 0 configure:21477: result: yes configure:21487: checking whether the compiler has stringstream configure:21524: x86_64-pc-linux-gnu-g++ -c -Werror=terminate -march=native -O2 -pipe conftest.cpp >&5 configure:21530: $? = 0 configure:21552: result: yes configure:22020: checking for /dev/urandom configure:22035: result: yes configure:22237: checking for the pthreads library -lpthreads configure:22280: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c -lpthreads >&5 /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status configure:22286: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define NDEBUG | #define FAST_COMPILATION | #define STDC_HEADERS 1 | #define HAVE_BOOL | #define HAVE_LONG_LONG | #define HAVE_TEMPLATES | #define HAVE_TYPENAME | #define HAVE_TEMPLATE_SCOPED_ARGUMENT_MATCHING | #define HAVE_DEFAULT_TEMPLATE_PARAMETERS | #define HAVE_TEMPLATE_QUALIFIED_RETURN_TYPE | #define HAVE_CONST_CAST | #define HAVE_REINTERPRET_CAST | #define HAVE_STATIC_CAST | #define HAVE_DYNAMIC_CAST | #define HAVE_EXCEPTIONS | #define HAVE_EXPLICIT | #define HAVE_NAMESPACES | #define HAVE_RTTI | #define HAVE_STD | #define HAVE_STL | #define HAVE_NUMERIC_LIMITS | #define HAVE_SSTREAM | #define HAVE_DEV_URANDOM | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:22306: result: no configure:22182: checking whether pthreads work without any flags configure:22280: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 /var/tmp/portage/sci-libs/beagle-3.0.3/temp/ccWDj55T.o: In function `main': conftest.c:(.text.startup+0x19): undefined reference to `pthread_join' conftest.c:(.text.startup+0x36): undefined reference to `__pthread_register_cancel' conftest.c:(.text.startup+0x43): undefined reference to `pthread_create' conftest.c:(.text.startup+0x4b): undefined reference to `__pthread_unregister_cancel' collect2: error: ld returned 1 exit status configure:22286: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define NDEBUG | #define FAST_COMPILATION | #define STDC_HEADERS 1 | #define HAVE_BOOL | #define HAVE_LONG_LONG | #define HAVE_TEMPLATES | #define HAVE_TYPENAME | #define HAVE_TEMPLATE_SCOPED_ARGUMENT_MATCHING | #define HAVE_DEFAULT_TEMPLATE_PARAMETERS | #define HAVE_TEMPLATE_QUALIFIED_RETURN_TYPE | #define HAVE_CONST_CAST | #define HAVE_REINTERPRET_CAST | #define HAVE_STATIC_CAST | #define HAVE_DYNAMIC_CAST | #define HAVE_EXCEPTIONS | #define HAVE_EXPLICIT | #define HAVE_NAMESPACES | #define HAVE_RTTI | #define HAVE_STD | #define HAVE_STL | #define HAVE_NUMERIC_LIMITS | #define HAVE_SSTREAM | #define HAVE_DEV_URANDOM | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:22306: result: no configure:22187: checking whether pthreads work with -Kthread configure:22280: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Kthread -Wl,-O1 -Wl,--as-needed conftest.c >&5 x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-Kthread'; did you mean '-pthread'? configure:22286: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define NDEBUG | #define FAST_COMPILATION | #define STDC_HEADERS 1 | #define HAVE_BOOL | #define HAVE_LONG_LONG | #define HAVE_TEMPLATES | #define HAVE_TYPENAME | #define HAVE_TEMPLATE_SCOPED_ARGUMENT_MATCHING | #define HAVE_DEFAULT_TEMPLATE_PARAMETERS | #define HAVE_TEMPLATE_QUALIFIED_RETURN_TYPE | #define HAVE_CONST_CAST | #define HAVE_REINTERPRET_CAST | #define HAVE_STATIC_CAST | #define HAVE_DYNAMIC_CAST | #define HAVE_EXCEPTIONS | #define HAVE_EXPLICIT | #define HAVE_NAMESPACES | #define HAVE_RTTI | #define HAVE_STD | #define HAVE_STL | #define HAVE_NUMERIC_LIMITS | #define HAVE_SSTREAM | #define HAVE_DEV_URANDOM | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:22306: result: no configure:22187: checking whether pthreads work with -kthread configure:22280: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -kthread -Wl,-O1 -Wl,--as-needed conftest.c >&5 x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-kthread'; did you mean '-pthread'? configure:22286: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define NDEBUG | #define FAST_COMPILATION | #define STDC_HEADERS 1 | #define HAVE_BOOL | #define HAVE_LONG_LONG | #define HAVE_TEMPLATES | #define HAVE_TYPENAME | #define HAVE_TEMPLATE_SCOPED_ARGUMENT_MATCHING | #define HAVE_DEFAULT_TEMPLATE_PARAMETERS | #define HAVE_TEMPLATE_QUALIFIED_RETURN_TYPE | #define HAVE_CONST_CAST | #define HAVE_REINTERPRET_CAST | #define HAVE_STATIC_CAST | #define HAVE_DYNAMIC_CAST | #define HAVE_EXCEPTIONS | #define HAVE_EXPLICIT | #define HAVE_NAMESPACES | #define HAVE_RTTI | #define HAVE_STD | #define HAVE_STL | #define HAVE_NUMERIC_LIMITS | #define HAVE_SSTREAM | #define HAVE_DEV_URANDOM | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:22306: result: no configure:22237: checking for the pthreads library -llthread configure:22280: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c -llthread >&5 /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -llthread collect2: error: ld returned 1 exit status configure:22286: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "Open BEAGLE" | #define PACKAGE_TARNAME "beagle" | #define PACKAGE_VERSION "3.0.3" | #define PACKAGE_STRING "Open BEAGLE 3.0.3" | #define PACKAGE_BUGREPORT "cgagne@gmail.com" | #define PACKAGE "beagle" | #define VERSION "3.0.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define NDEBUG | #define FAST_COMPILATION | #define STDC_HEADERS 1 | #define HAVE_BOOL | #define HAVE_LONG_LONG | #define HAVE_TEMPLATES | #define HAVE_TYPENAME | #define HAVE_TEMPLATE_SCOPED_ARGUMENT_MATCHING | #define HAVE_DEFAULT_TEMPLATE_PARAMETERS | #define HAVE_TEMPLATE_QUALIFIED_RETURN_TYPE | #define HAVE_CONST_CAST | #define HAVE_REINTERPRET_CAST | #define HAVE_STATIC_CAST | #define HAVE_DYNAMIC_CAST | #define HAVE_EXCEPTIONS | #define HAVE_EXPLICIT | #define HAVE_NAMESPACES | #define HAVE_RTTI | #define HAVE_STD | #define HAVE_STL | #define HAVE_NUMERIC_LIMITS | #define HAVE_SSTREAM | #define HAVE_DEV_URANDOM | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:22306: result: no configure:22187: checking whether pthreads work with -pthread configure:22280: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -pthread -Wl,-O1 -Wl,--as-needed conftest.c >&5 configure:22286: $? = 0 configure:22306: result: yes configure:22326: checking for joinable pthread attribute configure:22349: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -pthread -Wl,-O1 -Wl,--as-needed conftest.c >&5 configure:22355: $? = 0 configure:22423: result: PTHREAD_CREATE_JOINABLE configure:22430: checking if more special flags are required for pthreads configure:22437: result: no configure:22449: checking for cc_r configure:22477: result: x86_64-pc-linux-gnu-gcc configure:22519: checking if zlib is wanted configure:22534: result: yes configure:22561: checking for inflateEnd in -lz configure:22596: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -pthread -I/usr/include -Wl,-O1 -Wl,--as-needed -L/usr/lib conftest.c -lz >&5 configure:22602: $? = 0 configure:22620: result: yes configure:22638: checking zlib.h usability configure:22655: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -pthread -I/usr/include conftest.c >&5 configure:22661: $? = 0 configure:22675: result: yes configure:22679: checking zlib.h presence configure:22694: x86_64-pc-linux-gnu-gcc -E -I/usr/include conftest.c configure:22700: $? = 0 configure:22714: result: yes configure:22747: checking for zlib.h configure:22754: result: yes configure:22777: checking for inflateEnd in -lz configure:22836: result: yes configure:22847: checking zlib in /usr configure:22849: result: ok configure:23055: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by Open BEAGLE config.status 3.0.3, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on mr-fox config.status:712: creating Makefile config.status:712: creating PACC/Makefile config.status:712: creating PACC/Math/Makefile config.status:712: creating PACC/SVG/Makefile config.status:712: creating PACC/Socket/Makefile config.status:712: creating PACC/Threading/Makefile config.status:712: creating PACC/Util/Makefile config.status:712: creating PACC/XML/Makefile config.status:712: creating beagle/Makefile config.status:712: creating beagle/include/Makefile config.status:712: creating beagle/include/beagle/Makefile config.status:712: creating beagle/src/Makefile config.status:712: creating beagle/GA/Makefile config.status:712: creating beagle/GA/include/Makefile config.status:712: creating beagle/GA/include/beagle/Makefile config.status:712: creating beagle/GA/include/beagle/GA/Makefile config.status:712: creating beagle/GA/src/Makefile config.status:712: creating beagle/GP/Makefile config.status:712: creating beagle/GP/include/Makefile config.status:712: creating beagle/GP/include/beagle/Makefile config.status:712: creating beagle/GP/include/beagle/GP/Makefile config.status:712: creating beagle/GP/src/Makefile config.status:712: creating beagle/Coev/Makefile config.status:712: creating beagle/Coev/include/Makefile config.status:712: creating beagle/Coev/include/beagle/Makefile config.status:712: creating beagle/Coev/include/beagle/Coev/Makefile config.status:712: creating beagle/Coev/src/Makefile config.status:712: creating tests/Makefile config.status:712: creating tests/Common/Makefile config.status:712: creating tests/Exception/Makefile config.status:712: creating tests/GA/Makefile config.status:712: creating tests/GA/optfct/Makefile config.status:712: creating tests/GP/Makefile config.status:712: creating tests/GP/FitnessTestGPIndividual/Makefile config.status:712: creating tests/GP/ReadGPIndividual/Makefile config.status:712: creating tests/GP/WriteRandomGPIndividual/Makefile config.status:712: creating tests/LinGP/Makefile config.status:712: creating tests/LinGP/include/Makefile config.status:712: creating tests/LinGP/include/beagle/Makefile config.status:712: creating tests/LinGP/include/beagle/LinGP/Makefile config.status:712: creating tests/LinGP/src/Makefile config.status:712: creating tests/Roulette/Makefile config.status:712: creating tests/Thread/Makefile config.status:712: creating tests/TransportTCPIPOp/Makefile config.status:712: creating config/config-h config.status:1004: executing beagle/include/beagle/config.hpp commands config.status:1044: creating beagle/include/beagle/config.hpp - prefix BEAGLE for config/config-h defines config.status:1004: executing depfiles commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_bool=yes ac_cv_cxx_compiler_gnu=yes ac_cv_cxx_const_cast=yes ac_cv_cxx_default_template_parameters=yes ac_cv_cxx_dynamic_cast=yes ac_cv_cxx_exceptions=yes ac_cv_cxx_explicit=yes ac_cv_cxx_have_isfinite=no ac_cv_cxx_have_numeric_limits=yes ac_cv_cxx_have_sstream=yes ac_cv_cxx_have_std=yes ac_cv_cxx_have_stl=yes ac_cv_cxx_namespaces=yes ac_cv_cxx_reinterpret_cast=yes ac_cv_cxx_rtti=yes ac_cv_cxx_static_cast=yes ac_cv_cxx_template_qualified_base_class=no ac_cv_cxx_template_qualified_return_type=yes ac_cv_cxx_template_scoped_argument_matching=yes ac_cv_cxx_templates=yes ac_cv_cxx_typename=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-march=native -O2 -pipe' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-Werror=terminate -march=native -O2 -pipe' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FFLAGS_set=set ac_cv_env_FFLAGS_value='-O2 -pipe' ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-pc-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=x86_64-pc-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_file__dev_urandom=yes ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_lib_z_inflateEnd=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_install='/usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c' ac_cv_prog_AR=x86_64-pc-linux-gnu-ar ac_cv_prog_AWK=gawk ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E' ac_cv_prog_CXX=x86_64-pc-linux-gnu-g++ ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-g++ -E' ac_cv_prog_F77=x86_64-pc-linux-gnu-gfortran ac_cv_prog_PTHREAD_CC=x86_64-pc-linux-gnu-gcc ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_make_make_set=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_objdir=.libs lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/x86_64-pc-linux-gnu-nm -B' lt_cv_path_SED=/bin/sed lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/ {"\2", (lt_ptr) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int \1;/p'\''' lt_cv_sys_max_cmd_len=1572864 lt_lt_cv_prog_compiler_c_o='"yes"' lt_lt_cv_prog_compiler_c_o_CXX='"yes"' lt_lt_cv_prog_compiler_c_o_F77='"yes"' lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'\''"' lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"' lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .* \\(.*\\)\$/extern int \\1;/p'\''"' ob_cv_cxx_long_long=yes zlib_cv_libz=yes zlib_cv_zlib_h=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/config/missing --run aclocal-1.8' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='#' AMTAR='${SHELL} /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/config/missing --run tar' AR='x86_64-pc-linux-gnu-ar' AUTOCONF='${SHELL} /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/config/missing --run autoconf' AUTOHEADER='${SHELL} /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/config/missing --run autoheader' AUTOMAKE='${SHELL} /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/config/missing --run automake-1.8' AWK='gawk' CC='x86_64-pc-linux-gnu-gcc' CCDEPMODE='depmode=none' CFLAGS='-march=native -O2 -pipe -pthread' COMPILE_TESTS_FALSE='' COMPILE_TESTS_TRUE='#' CPP='x86_64-pc-linux-gnu-gcc -E' CPPFLAGS=' -I/usr/include -DPACC_ZLIB' CXX='x86_64-pc-linux-gnu-g++' CXXCPP='x86_64-pc-linux-gnu-g++ -E' CXXDEPMODE='depmode=none' CXXFLAGS='-Werror=terminate -march=native -O2 -pipe -pthread' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' ECHO='echo' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' F77='x86_64-pc-linux-gnu-gfortran' FAST_COMPILATION_FALSE='#' FAST_COMPILATION_TRUE='' FFLAGS='-O2 -pipe' GREP='/bin/grep' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s' LDFLAGS='-Wl,-O1 -Wl,--as-needed -L/usr/lib' LIBOBJS='' LIBS='-lz ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/config/missing --run makeinfo' OBJEXT='o' PACC_VERSION='1.3.1b' PACKAGE='beagle' PACKAGE_BUGREPORT='cgagne@gmail.com' PACKAGE_NAME='Open BEAGLE' PACKAGE_STRING='Open BEAGLE 3.0.3' PACKAGE_TARNAME='beagle' PACKAGE_VERSION='3.0.3' PATH_SEPARATOR=':' PTHREAD_CC='x86_64-pc-linux-gnu-gcc' PTHREAD_CFLAGS='-pthread' PTHREAD_LIBS='' RANLIB='x86_64-pc-linux-gnu-ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='x86_64-pc-linux-gnu-strip' VERSION='3.0.3' ac_ct_CC='' ac_ct_CXX='' ac_ct_F77='' acx_pthread_config='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__leading_dot='.' am__quote='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-pc-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='/usr/share' datarootdir='${prefix}/share' docdir='/usr/share/doc/beagle-3.0.3' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-pc-linux-gnu' host_alias='x86_64-pc-linux-gnu' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='/usr/share/info' install_sh='/var/tmp/portage/sci-libs/beagle-3.0.3/work/beagle-3.0.3/config/install-sh' libdir='/usr/lib64' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var/lib' mandir='/usr/share/man' mkdir_p='mkdir -p -- .' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "Open BEAGLE" #define PACKAGE_TARNAME "beagle" #define PACKAGE_VERSION "3.0.3" #define PACKAGE_STRING "Open BEAGLE 3.0.3" #define PACKAGE_BUGREPORT "cgagne@gmail.com" #define PACKAGE "beagle" #define VERSION "3.0.3" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define NDEBUG #define FAST_COMPILATION #define STDC_HEADERS 1 #define HAVE_BOOL #define HAVE_LONG_LONG #define HAVE_TEMPLATES #define HAVE_TYPENAME #define HAVE_TEMPLATE_SCOPED_ARGUMENT_MATCHING #define HAVE_DEFAULT_TEMPLATE_PARAMETERS #define HAVE_TEMPLATE_QUALIFIED_RETURN_TYPE #define HAVE_CONST_CAST #define HAVE_REINTERPRET_CAST #define HAVE_STATIC_CAST #define HAVE_DYNAMIC_CAST #define HAVE_EXCEPTIONS #define HAVE_EXPLICIT #define HAVE_NAMESPACES #define HAVE_RTTI #define HAVE_STD #define HAVE_STL #define HAVE_NUMERIC_LIMITS #define HAVE_SSTREAM #define HAVE_DEV_URANDOM #define HAVE_PTHREAD 1 #define HAVE_LIBZ 1 configure: exit 0