Bug 114097

Summary:	An ebuild for the science program: RepeatMasker
Product:	Gentoo Linux	Reporter:	Brady Catherman <gentoo>
Component:	New packages	Assignee:	Gentoo Linux bug wranglers <bug-wranglers>
Status:	RESOLVED DUPLICATE
Severity:	enhancement
Priority:	High
Version:	2005.1
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---

Description Brady Catherman 2005-11-30 19:11:33 UTC

I have no clue what this program does. I was asked to install it on our cluster
so I went ahead and made an ebuild for it.

This package has a fetch restriction.

(From the packages webpage)
RepeatMasker is a program that screens DNA sequences for interspersed repeats
and low complexity DNA sequences. The output of the program is a detailed
annotation of the repeats that are present in the query sequence as well as a
modified version of the query sequence in which all the annotated repeats have
been masked (default: replaced by Ns). It requiers an executable called
cross_match to run. Cross_match can be found in another application called
Phrap. Both Repeatmasker and Phrap have limited availablty.

(Phrap was submitted a bit ago)

Comment 1 Jakub Moc (RETIRED) gentoo-dev

2005-12-01 00:10:15 UTC


*** This bug has been marked as a duplicate of 114096 ***