sci-misc:h5utils-1.13.1:20220406-170038.log

sci-misc:h5utils-1.13.1:20220406-170038.log (text/plain), 8.53 KB, created by Toralf Förster on 2022-04-06 20:22:00 UTC

 * Package:    sci-misc/h5utils-1.13.1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc hdf kernel_linux octave userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking h5utils-1.13.1.tar.gz to /var/tmp/portage/sci-misc/h5utils-1.13.1/work
>>> Source unpacked in /var/tmp/portage/sci-misc/h5utils-1.13.1/work
>>> Preparing source in /var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1 ...
 * Applying h5utils-1.13.1-automagic.patch ...
 [ ok ]
 * Running eautoreconf in '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1' ...
 * Running 'aclocal --system-acdir=/var/tmp/portage/sci-misc/h5utils-1.13.1/temp/aclocal' ...
 [ ok ]
 * Running 'autoconf --force' ...
 [ ok ]
 * Running 'autoheader' ...
 [ ok ]
 * Running 'automake --add-missing --copy --foreign --force-missing' ...
 [ ok ]
 * Running elibtoolize in: h5utils-1.13.1/
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1 ...
 * econf: updating h5utils-1.13.1/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating h5utils-1.13.1/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/h5utils-1.13.1 --htmldir=/usr/share/doc/h5utils-1.13.1/html --libdir=/usr/lib64 --without-v5d --with-octave --with-hdf
checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to enable C11 features... none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for sin in -lm... yes
checking for snprintf... yes
checking for inflate in -lz... yes
checking for png_create_write_struct in -lpng... yes
checking for evaluator_get_variables in -lmatheval... no
configure: WARNING: can't find libmatheval: won't be able to compile h5math
checking for hdf.h... yes
checking for hdf/hdf.h... no
checking for jpeg_start_compress in -ljpeg... yes
checking for DFSDgetdata in -ldf... yes
checking for H5Fopen in -lhdf5... yes
checking for mkoctfile... mkoctfile
checking for octave... octave
checking for octave-config... octave-config
checking where octave plugins go... /usr/lib64/octave/6.4.0/site/oct/x86_64-pc-linux-gnu
checking for arpa/inet.h... yes
checking for netinet/in.h... yes
checking for stdint.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for htons... yes
checking size of float... 4
checking for htonl... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/man/h5topng.1
config.status: creating config.h
config.status: executing depfiles commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1 ...
make -j4 
make  all-am
make[1]: Entering directory '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1'
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o h5totxt.o h5totxt.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o arrayh5.o arrayh5.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o h5utils.o h5utils.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o h5fromtxt.o h5fromtxt.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o h5tovtk.o h5tovtk.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o h4fromh5.o h4fromh5.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o arrayh4.o arrayh4.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o h5fromh4.o h5fromh4.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o h5topng.o h5topng.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o writepng.o writepng.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -pipe -march=native -fno-diagnostics-color -O2 -c -o h5cyl2cart.o h5cyl2cart.c
x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5totxt h5totxt.o arrayh5.o h5utils.o  -lhdf5 -lz -lm 
x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5fromtxt h5fromtxt.o arrayh5.o h5utils.o  -lhdf5 -lz -lm 
x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5tovtk h5tovtk.o arrayh5.o h5utils.o  -lhdf5 -lz -lm 
x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h4fromh5 h4fromh5.o arrayh4.o arrayh5.o h5utils.o -ldf -ljpeg -lhdf5 -lz -lm 
x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5fromh4 h5fromh4.o arrayh4.o arrayh5.o h5utils.o -ldf -ljpeg -lhdf5 -lz -lm 
mkoctfile -DHAVE_CONFIG_H  ./h5read.cc ./arrayh5.c -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lhdf5 -lz -lm 
x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5cyl2cart h5cyl2cart.o arrayh5.o h5utils.o  -lhdf5 -lz -lm 
x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5topng h5topng.o writepng.o arrayh5.o h5utils.o -lpng -lhdf5 -lz -lm 
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -loctinterp: No such file or directory
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -loctave: No such file or directory
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:1112: h5read.oct] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1'
make: *** [Makefile:406: all] Error 2
 * ERROR: sci-misc/h5utils-1.13.1::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-misc/h5utils-1.13.1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-misc/h5utils-1.13.1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-misc:h5utils-1.13.1:20220406-170038.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-misc/h5utils-1.13.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-misc/h5utils-1.13.1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1'
 * S: '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1'