Base ───────────── 13.205699 seconds ArgTools ───────── 2.466692 seconds Artifacts ──────── 0.119328 seconds Base64 ─────────── 0.058496 seconds CRC32c ─────────── 0.003735 seconds FileWatching ───── 0.081584 seconds Libdl ──────────── 0.000979 seconds Logging ────────── 0.017922 seconds Mmap ───────────── 0.038156 seconds NetworkOptions ─── 0.045961 seconds SHA ────────────── 0.084646 seconds Serialization ──── 0.138099 seconds Sockets ────────── 0.146757 seconds Unicode ────────── 0.037773 seconds LinearAlgebra ──── 3.012998 seconds Markdown ───────── 0.363833 seconds Printf ─────────── 0.065343 seconds Random ─────────── 0.292824 seconds Tar ────────────── 0.126347 seconds Dates ──────────── 0.697897 seconds Distributed ────── 0.373586 seconds Future ─────────── 0.003023 seconds InteractiveUtils ─ 0.262281 seconds LibGit2 ────────── 0.626541 seconds Profile ────────── 0.176095 seconds SparseArrays ───── 1.799924 seconds UUIDs ──────────── 0.007013 seconds REPL ───────────── 1.602680 seconds SharedArrays ───── 0.060927 seconds TOML ───────────── 0.027799 seconds Test ───────────── 0.138406 seconds LibCURL ────────── 0.149981 seconds Downloads ──────── 0.151502 seconds Pkg ────────────── 2.242525 seconds LazyArtifacts ──── 0.001027 seconds Stdlibs total ──── 15.426835 seconds Sysimage built. Summary: Base ──────── 13.205699 seconds 46.1197% Stdlibs ───── 15.426835 seconds 53.8768% Total ─────── 28.633516 seconds make[1]: Leaving directory '/var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4' make[1]: Entering directory '/var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4' Warning: git information unavailable; versioning information limited /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/contrib/normalize_triplet.py:117: SyntaxWarning: invalid escape sequence '\d' version_numbers = list(filter(lambda x: re.match("\d+\.\d+(\.\d+)?", x), sys.argv[2].split())) cd /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/base && if ! JULIA_BINDIR=/var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/usr/bin WINEPATH="/var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/usr/bin;$WINEPATH" JULIA_NUM_THREADS=1 /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/usr/bin/julia -O3 -C "native" --output-o /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/usr/lib/julia/sys-o.a.tmp --startup-file=no --warn-overwrite=yes --sysimage /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/usr/lib/julia/sys.ji /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/contrib/generate_precompile.jl 1; then echo '*** This error is usually fixed by running `make clean`. If the error persists, try `make cleanall`. ***'; false; fi Generating REPL precompile statements... 27/41ERROR: LoadError: IOError: stream is closed or unusable Stacktrace: [1] check_open @ ./stream.jl:388 [inlined] [2] uv_write_async(s::Base.TTY, p::Ptr{UInt8}, n::UInt64) @ Base ./stream.jl:1074 [3] uv_write(s::Base.TTY, p::Ptr{UInt8}, n::UInt64) @ Base ./stream.jl:1037 [4] unsafe_write(s::Base.TTY, p::Ptr{UInt8}, n::UInt64) @ Base ./stream.jl:1120 [5] write @ ./strings/io.jl:244 [inlined] [6] write @ ./io.jl:676 [inlined] [7] (::Main.anonymous.var"#2#6"{Set{String}, String, Base.DevNull})(precompile_file::String, precompile_file_h::IOStream) @ Main.anonymous /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/contrib/generate_precompile.jl:341 [8] mktemp(fn::Main.anonymous.var"#2#6"{Set{String}, String, Base.DevNull}, parent::String) @ Base.Filesystem ./file.jl:734 [9] mktemp @ ./file.jl:732 [inlined] [10] generate_precompile_statements() @ Main.anonymous /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/contrib/generate_precompile.jl:287 [11] top-level scope @ /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/contrib/generate_precompile.jl:416 [12] eval(m::Module, e::Any) @ Core ./boot.jl:370 [13] top-level scope @ /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/contrib/generate_precompile.jl:10 in expression starting at /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/contrib/generate_precompile.jl:7 *** This error is usually fixed by running `make clean`. If the error persists, try `make cleanall`. *** make[1]: *** [sysimage.mk:89: /var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4/usr/lib/julia/sys-o.a] Error 1 make[1]: Leaving directory '/var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4' make: *** [Makefile:90: julia-sysimg-release] Error 2 * ERROR: dev-lang/julia-1.9.4-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=dev-lang/julia-1.9.4-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-lang/julia-1.9.4-r1::gentoo'`. * The complete build log is located at '/var/tmp/portage/dev-lang/julia-1.9.4-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-lang/julia-1.9.4-r1/temp/environment'. * Working directory: '/var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4' * S: '/var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4' >>> Failed to emerge dev-lang/julia-1.9.4-r1, Log file: >>> '/var/tmp/portage/dev-lang/julia-1.9.4-r1/temp/build.log' * Messages for package dev-lang/julia-1.9.4-r1: * ERROR: dev-lang/julia-1.9.4-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=dev-lang/julia-1.9.4-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-lang/julia-1.9.4-r1::gentoo'`. * The complete build log is located at '/var/tmp/portage/dev-lang/julia-1.9.4-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-lang/julia-1.9.4-r1/temp/environment'. * Working directory: '/var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4' * S: '/var/tmp/portage/dev-lang/julia-1.9.4-r1/work/julia-1.9.4' * Regenerating GNU info directory index... * Processed 148 info files. * After world updates, it is important to remove obsolete packages with * emerge --depclean. Refer to `man emerge` for more information. Reproducible: Always Steps to Reproduce: 1.emerge -av julia 2. 3. # emerge -pqv '=dev-lang/julia-1.9.4-r1::gentoo' [ebuild N ] dev-lang/julia-1.9.4-r1 # emerge --info '=dev-lang/julia-1.9.4-r1::gentoo' Portage 3.0.67 (python 3.13.3-final-0, default/linux/amd64/23.0/desktop/plasma, gcc-14, glibc-2.40-r8, 6.12.21-gentoo-dist x86_64) ================================================================= System Settings ================================================================= System uname: Linux-6.12.21-gentoo-dist-x86_64-AMD_Ryzen_9_9950X_16-Core_Processor-with-glibc2.40 KiB Mem: 96357148 total, 60223824 free KiB Swap: 33554428 total, 33554428 free Timestamp of repository gentoo: Sun, 04 May 2025 07:15:00 +0000 Head commit of repository gentoo: 47f4d9277737e9d5b7df8d38fa5ea03530712d29 Timestamp of repository guru: Sun, 04 May 2025 07:24:20 +0000 Head commit of repository guru: eecd67da86052814d57597507f99cebdb937c797 Head commit of repository scinext-overlay: 4c01d39eca223cc9bebe9945ca5e856708cf81b1 Timestamp of repository steam-overlay: Wed, 23 Apr 2025 15:38:10 +0000 Head commit of repository steam-overlay: 23f38449f9a86d0648566b51a51e73d9561a40e6 Head commit of repository zxe: de7cc9a68d5250099895848b747488586c7d85f9 sh bash 5.2_p37 ld GNU ld (Gentoo 2.44 p1) 2.44.0 app-misc/pax-utils: 1.3.8::gentoo app-shells/bash: 5.2_p37::gentoo dev-build/autoconf: 2.13-r8::gentoo, 2.72-r1::gentoo dev-build/automake: 1.17-r1::gentoo dev-build/cmake: 3.31.5::gentoo dev-build/libtool: 2.5.4::gentoo dev-build/make: 4.4.1-r100::gentoo dev-build/meson: 1.7.0::gentoo dev-lang/perl: 5.40.2::gentoo dev-lang/python: 3.12.10::gentoo, 3.13.3::gentoo dev-lang/rust-bin: 1.85.1::gentoo llvm-core/clang: 19.1.7::gentoo llvm-core/lld: 19.1.7::gentoo llvm-core/llvm: 19.1.7::gentoo sys-apps/baselayout: 2.17::gentoo sys-apps/openrc: 0.56::gentoo sys-apps/sandbox: 2.39::gentoo sys-devel/binutils: 2.44::gentoo sys-devel/binutils-config: 5.5.2::gentoo sys-devel/gcc: 13.3.1_p20241220::gentoo, 14.2.1_p20241221::gentoo sys-devel/gcc-config: 2.12.1::gentoo sys-kernel/linux-headers: 6.12::gentoo (virtual/os-headers) sys-libs/glibc: 2.40-r8::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 volatile: False sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 3 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: guru location: /var/db/repos/guru sync-type: git sync-uri: https://github.com/gentoo-mirror/guru.git masters: gentoo volatile: False scinext-overlay location: /var/db/repos/scinext-overlay sync-type: git sync-uri: https://github.com/RarogCmex/scinext-overlay.git masters: gentoo volatile: False steam-overlay location: /var/db/repos/steam-overlay sync-type: git sync-uri: https://github.com/gentoo-mirror/steam-overlay.git masters: gentoo volatile: False zxe location: /var/db/repos/zxe sync-type: git sync-uri: https://github.com/redcode/zxe-gentoo-overlay.git masters: gentoo volatile: False fpga-overlay location: /usr/local/portage/fpga-overlay masters: gentoo priority: 30 volatile: True lucretia location: /usr/local/portage/lucretia masters: gentoo priority: 30 volatile: True Binary Repositories: gentoobinhost priority: 1 sync-uri: https://www.mirrorservice.org/sites/distfiles.gentoo.org/releases/amd64/binpackages/23.0/x86-64 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="@FREE @BINARY-REDISTRIBUTABLE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/cache/distfiles" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-march=native -O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance binpkg-request-signature buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-march=native -O2 -pipe" GENTOO_MIRRORS="http://ftp.free.fr/mirrors/ftp.gentoo.org/ http://mirrors.ircam.fr/pub/gentoo-distfiles/ https://mirrors.ircam.fr/pub/gentoo-distfiles/ https://mirror.dogado.de/gentoo http://ftp.agdsn.de/gentoo https://ftp.spline.inf.fu-berlin.de/mirrors/gentoo/ http://ftp.spline.inf.fu-berlin.de/mirrors/gentoo/ https://mirrors.gethosted.online/gentoo/ http://mirrors.gethosted.online/gentoo/ https://www.mirrorservice.org/sites/distfiles.gentoo.org/ http://www.mirrorservice.org/sites/distfiles.gentoo.org/ https://scinext-overlay-distfiles.imperium.org.ru" LANG="en_GB.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs" LEX="flex" MAKEOPTS="-j32 -l35" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" RUSTFLAGS=" -C target-cpu=native" SHELL="/bin/bash" USE="X a52 aac acl acpi activities alembic alsa amd64 avif bluetooth branding bzip2 cairo cdda cdr cet collada color-management colord crypt cuda cudnn cups dbus declarative dist-kernel dri dts dvd dvdr elogind encode exif ffmpeg flac gdbm gif gpm gtk gui harfbuzz heif iconv icu ios ipv6 jack jpeg kde kwallet ladspa lcms ldac libnotify libtirpc lv2 mad midi mng mp3 mp4 mpeg multilib ncurses networkmanager nls nsm ogg opencv openexr opengl openmp openvdb pam pango pcre pdf pipewire plasma png policykit ppds pulseaudio qml qt5 qt6 readline screencast sdl seccomp semantic-desktop sound spell ssl startup-notification svg test-rust theora tiff truetype udev udisks unicode upower usb v4l vaapi vorbis vulkan wayland webp widgets wxwidgets x264 xattr xcb xft xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gcc_14" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 avx512_bf16 avx512_bitalg avx512_vbmi2 avx512_vnni avx512_vp2intersect avx512_vpopcntdq avx512bw avx512cd avx512dq avx512f avx512ifma avx512vbmi avx512vl f16c fma3 pclmul popcnt rdrand sha sse3 sse4_1 sse4_2 sse4a ssse3 vpclmulqdq" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" GRUB_PLATFORMS="efi-64" GUILE_SINGLE_TARGET="3-0" GUILE_TARGETS="3-0" INPUT_DEVICES="wacom libinput" KERNEL="linux" L10N="en-GB" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LLVM_TARGETS="M68k SPIRV" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-2" POSTGRES_TARGETS="postgres17" PYTHON_SINGLE_TARGET="python3_13" PYTHON_TARGETS="python3_13" QEMU_SOFTMMU_TARGETS="aarch64 arm i386 m68k mips mips64 mips64el mipsel ppc ppc64 riscv32 riscv64 x86_64" RUBY_TARGETS="ruby32" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, SIZE, STRINGS, STRIP, YACC, YFLAGS
Created attachment 927581 [details] Build log
Created attachment 927582 [details] Build log for 1.8.5-r2
This appears (at least for 1.8.5) to be a incompatibility with newer versions of libgit2 (evidence below). Because julia is doing foreign-function calls into the library, it has to include julia-language definitions of the libgit2 types, and so is likely to break after any ABI change. Julia 1.8.5 appears to be compatible with libgit2 versions up to something around 1.4, and 1.9.4 appears to target 1.5, both of which are definitely not ABI-compatible with any version still available in the gentoo tree. Evidence: After modifying the script to enable debug output, the actual cause of the build hang is a segfault in code called from .../LibGit2/src/repository.jl:459 (full output below). Looking at that line, it's a c-language call to libgit2's git_clone function, passing types compatible with libgit2-1.4 instead of the current version. Debug output: Generating REPL precompile statements... 25/40 #### inputting statement: #### "Pkg.add(\"TestPkg\")" #### julia> Pkg.add("TestPkg") Resolving package versions... Cloning [7b03278a-bf1f-4167-8abd-9651b101e75b] TestPkg from /tmp/jl_JdHt1q/TestPkg.jl signal (11): Segmentation fault in expression starting at REPL[16]:1 unknown function (ip: 0x7f3d945ff008) macro expansion at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/LibGit2/src/error.jl:108 [inlined] clone at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/LibGit2/src/repository.jl:459 #clone#120 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/LibGit2/src/LibGit2.jl:583 clone##kw at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/LibGit2/src/LibGit2.jl:556 [inlined] #clone#3 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/GitTools.jl:115 clone##kw at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/GitTools.jl:88 [inlined] #ensure_clone#2 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/GitTools.jl:74 [inlined] ensure_clone##kw at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/GitTools.jl:70 [inlined] install_git at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/Operations.jl:587 unknown function (ip: 0x7f3d88b9d6ad) #download_source#43 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/Operations.jl:814 download_source at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/Operations.jl:700 [inlined] #add#85 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/Operations.jl:1278 add##kw at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/Operations.jl:1265 [inlined] #add#129 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/API.jl:275 add##kw at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/API.jl:226 unknown function (ip: 0x7f3d88cc5081) #add#29 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/API.jl:156 add at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/API.jl:145 #add#27 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/API.jl:144 [inlined] add at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/API.jl:144 [inlined] #add#26 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/API.jl:143 [inlined] add at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/Pkg/src/API.jl:143 unknown function (ip: 0x7f3d87137106) jl_apply at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/julia.h:1843 [inlined] do_call at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/interpreter.c:126 eval_value at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/interpreter.c:215 eval_stmt_value at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/interpreter.c:166 [inlined] eval_body at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/interpreter.c:612 jl_interpret_toplevel_thunk at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/interpreter.c:750 jl_toplevel_eval_flex at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/toplevel.c:906 jl_toplevel_eval_flex at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/toplevel.c:850 ijl_toplevel_eval_in at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/toplevel.c:965 eval at ./boot.jl:368 [inlined] eval_user_input at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:151 repl_backend_loop at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:247 start_repl_backend at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:232 #run_repl#47 at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:369 run_repl at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/share/julia/stdlib/v1.8/REPL/src/REPL.jl:355 unknown function (ip: 0x7f3d87db22ca) #967 at ./client.jl:419 unknown function (ip: 0x7f3d87d3ff66) jl_apply at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/julia.h:1843 [inlined] jl_f__call_latest at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/builtins.c:774 #invokelatest#2 at ./essentials.jl:729 [inlined] invokelatest at ./essentials.jl:726 [inlined] run_main_repl at ./client.jl:404 exec_options at ./client.jl:318 _start at ./client.jl:522 unknown function (ip: 0x7f3d87d2fb73) jl_apply at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/julia.h:1843 [inlined] true_main at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/jlapi.c:575 jl_repl_entrypoint at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/src/jlapi.c:719 main at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/cli/loader_exe.c:59 unknown function (ip: 0x7f3d9a5fd3ed) __libc_start_main at /lib64/libc.so.6 (unknown line) _start at /var/tmp/portage/dev-lang/julia-1.8.5-r2/work/julia-1.8.5/usr/bin/julia (unknown line) Allocations: 109006256 (Pool: 108951540; Big: 54716); GC: 105
(In reply to William Throwe from comment #3) > This appears (at least for 1.8.5) to be a incompatibility with newer > versions of libgit2 (evidence below). Because julia is doing > foreign-function calls into the library, it has to include julia-language > definitions of the libgit2 types, and so is likely to break after any ABI > change. Julia 1.8.5 appears to be compatible with libgit2 versions up to > something around 1.4, and 1.9.4 appears to target 1.5, both of which are > definitely not ABI-compatible with any version still available in the gentoo > tree. > Ah, thanks for the analysis.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a1e1e4b7366c54b65c51d907ded4b7689a679c86 commit a1e1e4b7366c54b65c51d907ded4b7689a679c86 Author: Sam James <sam@gentoo.org> AuthorDate: 2025-05-11 23:34:42 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2025-05-11 23:35:01 +0000 dev-lang/julia: don't use system libgit2 Julia uses libgit2 via FFI and libgit2 has unstable ABI. Closes: https://bugs.gentoo.org/955402 Thanks-to: William Throwe <wtt6@cornell.edu> Signed-off-by: Sam James <sam@gentoo.org> dev-lang/julia/{julia-1.8.3-r5.ebuild => julia-1.8.3-r6.ebuild} | 8 +++++--- dev-lang/julia/{julia-1.8.5-r2.ebuild => julia-1.8.5-r3.ebuild} | 8 +++++--- dev-lang/julia/{julia-1.9.0-r1.ebuild => julia-1.9.0-r2.ebuild} | 8 +++++--- dev-lang/julia/{julia-1.9.4-r1.ebuild => julia-1.9.4-r2.ebuild} | 8 +++++--- 4 files changed, 20 insertions(+), 12 deletions(-)
