too long lines were shrinked: [123/149] cd /var/tmp/portage/sci-chemistry/molsketch-0.8.1/work/Molsketch-0.8.1_build/molsketch && /usr/lib64/qt6/libexec/rcc --name oxygenicons --output /var/tmp/portage/sci-chemistry/molsketch-0.8.1/work/Molsketch-0.8.1_build/molsketch/qrc_oxygenicons.cpp /var/tmp/portage/sci-chemistry/molsketch- [124/149] /usr/bin/x86_64-pc-linux-gnu-g++ -DMSK_INSTALL_BINS="\"\\\"/usr/bin\\\"\"" -DMSK_INSTALL_INCLUDES="\"\\\"/usr/include\\\"\"" -DMSK_INSTALL_LIBS64="\"\\\"/usr/lib64/molsketch\\\"\"" -DMSK_INSTALL_LIBS="\"\\\"/usr/lib/molsketch\\\"\"" -DMSK_OBABELIFACE="\"\\\"yes\\\"\"" -DMSK_PREFIX="\"\\\"/ FAILED: obabeliface/CMakeFiles/obabeliface_LIB.dir/obabeliface.cpp.o /usr/bin/x86_64-pc-linux-gnu-g++ -DMSK_INSTALL_BINS="\"\\\"/usr/bin\\\"\"" -DMSK_INSTALL_INCLUDES="\"\\\"/usr/include\\\"\"" -DMSK_INSTALL_LIBS64="\"\\\"/usr/lib64/molsketch\\\"\"" -DMSK_INSTALL_LIBS="\"\\\"/usr/lib/molsketch\\\"\"" -DMSK_OBABELIFACE="\"\\\"yes\\\"\"" -DMSK_PREFIX="\"\\\"/usr\\\"\"" In file included from /var/tmp/portage/sci-chemistry/molsketch-0.8.1/work/Molsketch-0.8.1/obabeliface/obabeliface.cpp:53: /var/tmp/portage/sci-chemistry/molsketch-0.8.1/work/Molsketch-0.8.1/obabeliface/obabeliface.cpp: In function bool Molsketch::hasCoordinates(OpenBabel::OBMol&): /usr/include/openbabel3/openbabel/obiter.h:417:49: error: impl has not been declared 417 | #define FOR_ATOMS_OF_MOL(a,m) for (auto a : impl::MolGetAtoms(m)) | ^~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_desktop_gnome_systemd-20250422-063502 The attached etc.portage.tar.xz has all details. ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-15 * clang version 20.1.3 llvm-config: 20.1.3 Python 3.12.10 go version go1.24.2 linux/amd64 Available Ruby profiles: [1] ruby32 (with Rubygems) [2] ruby34 (with Rubygems) * Available Rust versions: [1] rust-bin-1.71.1 [2] rust-bin-1.86.0 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.26_p4 [openjdk-bin-11] 2) Eclipse Temurin JDK 17.0.14_p7 [openjdk-bin-17] *) Eclipse Temurin JDK 21.0.6_p7 [openjdk-bin-21] 4) Eclipse Temurin JDK 8.442_p06 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 [4] openjdk-bin-21 system-vm HEAD of ::gentoo commit bbc4c735887c8e1ab03bfe60641a07bcdc549ca2 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Mon Apr 28 06:20:17 2025 +0000 2025-04-28 06:20:16 UTC The tinderbox task was: sci-chemistry/molsketch emerge -qpvO =sci-chemistry/molsketch-0.8.1 [ebuild N ] sci-chemistry/molsketch-0.8.1 USE="openbabel"
Created attachment 926939 [details] emerge-info.txt
Created attachment 926940 [details] emerge-history.txt.xz
Created attachment 926941 [details] environment
Created attachment 926942 [details] etc.clang.tar.xz
Created attachment 926943 [details] etc.portage.tar.xz
Created attachment 926944 [details] logs.tar.xz
Created attachment 926945 [details] qlist-info.txt.xz
Created attachment 926946 [details] sci-chemistry:molsketch-0.8.1:20250428-075755.log
Created attachment 926947 [details] temp.tar.xz
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c346a2a598fef675a7de2200f16b186df7ac0a71 commit c346a2a598fef675a7de2200f16b186df7ac0a71 Author: Nicolas PARLANT <nicolas.parlant@parhuet.fr> AuthorDate: 2025-04-28 20:36:00 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2025-04-29 19:11:34 +0000 sci-chemistry/molsketch: fix build with openbabel-3.1.1_p20241221 it occurs only with openbabel-3.1.1_p20241221, because openbabel has changed namespaces : https://github.com/openbabel/openbabel/commit/a0ec8c96554d4ee4f9bf80b00165b1ce554c8621 Closes: https://bugs.gentoo.org/955047 Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr> Part-of: https://github.com/gentoo/gentoo/pull/41831 Closes: https://github.com/gentoo/gentoo/pull/41831 Signed-off-by: Sam James <sam@gentoo.org> .../files/molsketch-0.8.1-obabel_namespace.patch | 37 ++++++++++++++++++++++ sci-chemistry/molsketch/molsketch-0.8.1.ebuild | 2 ++ 2 files changed, 39 insertions(+)
