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Bug 954187 - dev-python/xarray-2025.3.1: fails tests on x86 (xarray/tests/test_datatree.py::TestRepr::test_doc_example)
Summary: dev-python/xarray-2025.3.1: fails tests on x86 (xarray/tests/test_datatree.py...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords: TESTFAILURE
Depends on:
Blocks: 954070
  Show dependency tree
 
Reported: 2025-04-22 05:54 UTC by Sam James
Modified: 2025-04-22 12:49 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.xz (build.log.xz,240.98 KB, application/x-xz)
2025-04-22 05:54 UTC, Sam James
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Sam James archtester Gentoo Infrastructure gentoo-dev Security 2025-04-22 05:54:10 UTC
Created attachment 925659 [details]
build.log.xz

```
FAILED xarray/tests/test_datatree.py::TestRepr::test_doc_example - assert "<xarray.DataTree>\nGroup: /\n│   Dimensions:  (time: 2)\n│   Coordinates:\n│     * time     (time) <U7 56B '2022-01' '2023-01'\n├── Group: /weather\n│   │   Dimensions:     (station: 6, time: 2)\n│   │   Coordinates:\n│   │     * station     (station) <U1 24B 'a' 'b' 'c' 'd' 'e' 'f'\n│   │   Data variables:\n│   │       wind_speed  (time, station) float64 96B 2.0 2.0 2.0 2.0 ... 2.0 2.0 2.0 2.0\n│   │       pressure    (time, station) float64 96B 3.0 3.0 3.0 3.0 ... 3.0 3.0 3.0 3.0\n│   └── Group: /weather/temperature\n│           Dimensions:          (time: 2, station: 6)\n│           Data variables:\n│               air_temperature  (time, station) float64 96B 4.0 4.0 4.0 4.0 ... 4.0 4.0 4.0\n│               dewpoint         (time, station) float64 96B 5.0 5.0 5.0 5.0 ... 5.0 5.0 5.0\n└── Group: /satellite\n        Dimensions:     (lat: 3, lon: 3, time: 2)\n        Coordinates:\n          * lat         (lat) int32 12B 10 20 30\n          * lon         (lon) int32 12B -100 -80 -60\n        Data variables:\n            infrared    (time, lon, lat) float64 144B 6.0 6.0 6.0 6.0 ... 6.0 6.0 6.0\n            true_color  (time, lon, lat) float64 144B 7.0 7.0 7.0 7.0 ... 7.0 7.0 7.0" == "<xarray.DataTree>\nGroup: /\n│   Dimensions:  (time: 2)\n│   Coordinates:\n│     * time     (time) <U7 56B '2022-01' '2023-01'\n├── Group: /weather\n│   │   Dimensions:     (station: 6, time: 2)\n│   │   Coordinates:\n│   │     * station     (station) <U1 24B 'a' 'b' 'c' 'd' 'e' 'f'\n│   │   Data variables:\n│   │       wind_speed  (time, station) float64 96B 2.0 2.0 2.0 2.0 ... 2.0 2.0 2.0 2.0\n│   │       pressure    (time, station) float64 96B 3.0 3.0 3.0 3.0 ... 3.0 3.0 3.0 3.0\n│   └── Group: /weather/temperature\n│           Dimensions:          (time: 2, station: 6)\n│           Data variables:\n│               air_temperature  (time, station) float64 96B 4.0 4.0 4.0 4.0 ... 4.0 4.0 4.0\n│               dewpoint         (time, station) float64 96B 5.0 5.0 5.0 5.0 ... 5.0 5.0 5.0\n└── Group: /satellite\n        Dimensions:     (lat: 3, lon: 3, time: 2)\n        Coordinates:\n          * lat         (lat) int64 24B 10 20 30\n          * lon         (lon) int64 24B -100 -80 -60\n        Data variables:\n            infrared    (time, lon, lat) float64 144B 6.0 6.0 6.0 6.0 ... 6.0 6.0 6.0\n            true_color  (time, lon, lat) float64 144B 7.0 7.0 7.0 7.0 ... 7.0 7.0 7.0"
  
    <xarray.DataTree>
    Group: /
    │   Dimensions:  (time: 2)
    │   Coordinates:
    │     * time     (time) <U7 56B '2022-01' '2023-01'
    ├── Group: /weather
    │   │   Dimensions:     (station: 6, time: 2)
    │   │   Coordinates:
    │   │     * station     (station) <U1 24B 'a' 'b' 'c' 'd' 'e' 'f'
    │   │   Data variables:
    │   │       wind_speed  (time, station) float64 96B 2.0 2.0 2.0 2.0 ... 2.0 2.0 2.0 2.0
    │   │       pressure    (time, station) float64 96B 3.0 3.0 3.0 3.0 ... 3.0 3.0 3.0 3.0
    │   └── Group: /weather/temperature
    │           Dimensions:          (time: 2, station: 6)
    │           Data variables:
    │               air_temperature  (time, station) float64 96B 4.0 4.0 4.0 4.0 ... 4.0 4.0 4.0
    │               dewpoint         (time, station) float64 96B 5.0 5.0 5.0 5.0 ... 5.0 5.0 5.0
    └── Group: /satellite
            Dimensions:     (lat: 3, lon: 3, time: 2)
            Coordinates:
  -           * lat         (lat) int64 24B 10 20 30
  ?                                  ^^^ ^
  +           * lat         (lat) int32 12B 10 20 30
  ?                                  ^ ^^^
  -           * lon         (lon) int64 24B -100 -80 -60
  ?                                  ^^^ ^
  +           * lon         (lon) int32 12B -100 -80 -60
  ?                                  ^ ^^^
            Data variables:
                infrared    (time, lon, lat) float64 144B 6.0 6.0 6.0 6.0 ... 6.0 6.0 6.0
                true_color  (time, lon, lat) float64 144B 7.0 7.0 7.0 7.0 ... 7.0 7.0 7.0
= 1 failed, 12837 passed, 5746 skipped, 53 xfailed, 9 xpassed, 59 warnings in 95.40s (0:01:35) =
 * ERROR: dev-python/xarray-2025.3.1::gentoo failed (test phase):
 *   pytest failed with python3.12
```

---

# emerge --info
Portage 3.0.67 (python 3.12.9-final-0, default/linux/x86/23.0/i686/systemd, gcc-14, glibc-2.40-r8, 6.14.3 i686)
=================================================================
System uname: Linux-6.14.3-i686-AMD_Ryzen_9_3950X_16-Core_Processor-with-glibc2.40
KiB Mem:    65737644 total,  26911944 free
KiB Swap:   16662520 total,  10167452 free
Timestamp of repository gentoo: Tue, 22 Apr 2025 03:35:10 +0000
sh bash 5.2_p37
ld GNU ld (Gentoo 2.44 p1) 2.44.0
app-misc/pax-utils:        1.3.8::gentoo
app-shells/bash:           5.2_p37::gentoo
dev-build/autoconf:        2.72-r1::gentoo
dev-build/automake:        1.17-r1::gentoo
dev-build/cmake:           3.31.5::gentoo
dev-build/libtool:         2.5.4::gentoo
dev-build/make:            4.4.1-r100::gentoo
dev-build/meson:           1.7.0::gentoo
dev-lang/perl:             5.40.2::gentoo
dev-lang/python:           3.12.9::gentoo, 3.13.2::gentoo
dev-lang/rust:             1.85.1::gentoo
dev-lang/rust-bin:         1.84.1-r2::gentoo, 1.85.1::gentoo
llvm-core/llvm:            19.1.7::gentoo
sys-apps/baselayout:       2.17::gentoo
sys-apps/sandbox:          2.39::gentoo
sys-apps/systemd:          256.10::gentoo
sys-devel/binutils:        2.44::gentoo
sys-devel/binutils-config: 5.5.2::gentoo
sys-devel/gcc:             11.5.0::gentoo, 12.4.1_p20241219::gentoo, 13.3.1_p20241220::gentoo, 14.2.1_p20241221::gentoo
sys-devel/gcc-config:      2.12.1::gentoo
sys-kernel/linux-headers:  6.12::gentoo (virtual/os-headers)
sys-libs/glibc:            2.40-r8::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-max-age: 3
    sync-rsync-extra-opts: 
    sync-rsync-verify-jobs: 1

ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=pentium4 -mfpmath=sse -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.2/ext-active/ /etc/php/cgi-php8.2/ext-active/ /etc/php/cli-php8.2/ext-active/ /etc/php/fpm-php8.2/ext-active/ /etc/php/phpdbg-php8.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d"
CXXFLAGS="-O2 -march=pentium4 -mfpmath=sse -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --complete-graph --usepkg=y"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -march=pentium4 -mfpmath=sse -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live clean-logs config-protect-if-modified distlocks fixlafiles ipc-sandbox merge-wait multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox split-elog split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=pentium4 -mfpmath=sse -pipe"
GENTOO_MIRRORS="https://www.mirrorservice.org/sites/distfiles.gentoo.org/ https://mirror.bytemark.co.uk/gentoo/ https://mirrors.soeasyto.com/distfiles.gentoo.org/ https://mirrors.gethosted.online/gentoo/"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs"
LEX="flex"
MAKEOPTS="-j4 -l4"
PKGDIR="/var/cache/binpkgs"
PORTAGE_COMPRESS="xz"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl bzip2 crypt gdbm iconv ipv6 libtirpc ncurses nls openmp pam pcre readline seccomp ssl systemd test-rust udev unicode x86 xattr zlib" ABI_X86="32" ADA_TARGET="gcc_14" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx sse sse2 mmxext" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" GUILE_SINGLE_TARGET="3-0" GUILE_TARGETS="3-0" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-2" POSTGRES_TARGETS="postgres17" PYTHON_SINGLE_TARGET="python3_12" PYTHON_TARGETS="python3_12" RUBY_TARGETS="ruby32" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Larry the Git Cow gentoo-dev 2025-04-22 12:49:05 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ec90ebd99235206c2f6bbf13e0bf1c4f1c120273

commit ec90ebd99235206c2f6bbf13e0bf1c4f1c120273
Author:     Michał Górny <mgorny@gentoo.org>
AuthorDate: 2025-04-22 12:48:29 +0000
Commit:     Michał Górny <mgorny@gentoo.org>
CommitDate: 2025-04-22 12:49:01 +0000

    dev-python/xarray: Skip one more test failing on 32-bit arches
    
    Closes: https://bugs.gentoo.org/954187
    Signed-off-by: Michał Górny <mgorny@gentoo.org>

 dev-python/xarray/xarray-2025.3.1.ebuild | 1 +
 1 file changed, 1 insertion(+)