* Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/gromacs-2024.5/work/gromacs-2024.5_build" * Applying gromacs-gcc-15.patch ... /usr/lib/portage/python3.12/phase-helpers.sh: line 995: /var/tmp/portage/sci-chemistry/gromacs-2024.5/files/gromacs-gcc-15.patch: No such file or directory /usr/lib/portage/python3.12/phase-helpers.sh: line 1000: /var/tmp/portage/sci-chemistry/gromacs-2024.5/files/gromacs-gcc-15.patch: No such file or directory [ !! ] * ERROR: sci-chemistry/gromacs-2024.5::gentoo failed (prepare phase): * patch -p1 failed with /var/tmp/portage/sci-chemistry/gromacs-2024.5/files/gromacs-gcc-15.patch * * Call stack: ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_no_multilib_hardened_systemd-20250209-073503 UNMASKED: [glibc] Requested by dilfridge ~sys-libs/glibc-2.41 [meson] Please re-assign to ztrawhcse@ if you cannot reproduced it with regular meson. <dev-build/meson-9999 >=app-text/dvisvgm-2024 >=app-text/ps2pkm-1.8_p20240311 >=app-text/texlive-2024 >=app-text/texlive-core-2024 >=dev-libs/kpathsea-6.4.0 >=dev-libs/ptexenc-1.4.6 dev-python/latexrestricted >=dev-tex/biber-2.20 >=dev-tex/biblatex-3.20 >=dev-tex/bibtexu-3.72_p20240311 >=dev-tex/glossaries-4.55 dev-tex/latex2pydata >=dev-tex/latexmk-4.85 >=dev-tex/minted-3.4.0 >=dev-tex/tex4ht-20240311 >=dev-texlive/texlive-basic-2024 >=dev-texlive/texlive-bibtexextra-2024 >=dev-texlive/texlive-binextra-2024 >=dev-texlive/texlive-context-2024 >=dev-texlive/texlive-fontsextra-2024 >=dev-texlive/texlive-fontsrecommended-2024 >=dev-texlive/texlive-fontutils-2024 >=dev-texlive/texlive-formatsextra-2024 >=dev-texlive/texlive-games-2024 >=dev-texlive/texlive-humanities-2024 >=dev-texlive/texlive-langarabic-2024 >=dev-texlive/texlive-langchinese-2024 >=dev-texlive/texlive-langcjk-2024 >=dev-texlive/texlive-langcyrillic-2024 >=dev-texlive/texlive-langczechslovak-2024 >=dev-texlive/texlive-langenglish-2024 >=dev-texlive/texlive-langeuropean-2024 >=dev-texlive/texlive-langfrench-2024 >=dev-texlive/texlive-langgerman-2024 >=dev-texlive/texlive-langgreek-2024 >=dev-texlive/texlive-langitalian-2024 >=dev-texlive/texlive-langjapanese-2024 >=dev-texlive/texlive-langkorean-2024 >=dev-texlive/texlive-langother-2024 >=dev-texlive/texlive-langpolish-2024 >=dev-texlive/texlive-langportuguese-2024 >=dev-texlive/texlive-langspanish-2024 >=dev-texlive/texlive-latex-2024 >=dev-texlive/texlive-latexextra-2024 >=dev-texlive/texlive-latexrecommended-2024 >=dev-texlive/texlive-luatex-2024 >=dev-texlive/texlive-mathscience-2024 >=dev-texlive/texlive-metapost-2024 >=dev-texlive/texlive-music-2024 >=dev-texlive/texlive-pictures-2024 >=dev-texlive/texlive-plaingeneric-2024 >=dev-texlive/texlive-pstricks-2024 >=dev-texlive/texlive-publishers-2024 >=dev-texlive/texlive-xetex-2024 The attached etc.portage.tar.xz has all details. ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-14 * clang version 19.1.7 llvm-config: 19.1.7 Python 3.12.9 go version go1.23.6 linux/amd64 Available Ruby profiles: [1] ruby32 (with Rubygems) [2] ruby34 (with Rubygems) * Available Rust versions: [1] rust-bin-1.84.1 [2] rust-1.84.1 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.26_p4 [openjdk-bin-11] 2) Eclipse Temurin JDK 17.0.14_p7 [openjdk-bin-17] *) Eclipse Temurin JDK 21.0.6_p7 [openjdk-bin-21] 4) Eclipse Temurin JDK 8.442_p06 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 [4] openjdk-bin-21 system-vm The Glorious Glasgow Haskell Compilation System, version 9.2.8 HEAD of ::gentoo commit cb9dd46b4b6ec9aebed5b0b2367d5c9cfae90ae5 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Wed Feb 19 22:33:35 2025 +0000 2025-02-19 22:33:35 UTC emerge -qpvO =sci-chemistry/gromacs-2024.5 [ebuild N ] sci-chemistry/gromacs-2024.5 USE="blas custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive openmp single-precision threads tng -build-manual -clang -clang-cuda -cuda -double-precision -lapack -mkl -mpi -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_12 -python3_11"
Created attachment 919473 [details] emerge-info.txt
Created attachment 919474 [details] emerge-history.txt.xz
Created attachment 919475 [details] environment
Created attachment 919476 [details] etc.clang.tar.xz
Created attachment 919477 [details] etc.portage.tar.xz
Created attachment 919478 [details] logs.tar.xz
Created attachment 919479 [details] qlist-info.txt.xz
Created attachment 919480 [details] sci-chemistry:gromacs-2024.5:20250219-232726.log
Created attachment 919481 [details] temp.tar.xz
commit 106c4d022efb51015baff60873f5d02149b1e363 Author: Alexey Shvetsov <alexxy@gentoo.org> Date: Thu Jan 30 14:04:11 2025 +0300 sci-chemistry/gromacs: add 2025_rc, drop 2025.0_beta Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> dropped the patch
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=150fc739032ce8de5b5643722bf3507dc358e0d2 commit 150fc739032ce8de5b5643722bf3507dc358e0d2 Author: Alexey Shvetsov <alexxy@gentoo.org> AuthorDate: 2025-02-24 10:20:08 +0000 Commit: Alexey Shvetsov <alexxy@gentoo.org> CommitDate: 2025-02-24 10:20:08 +0000 sci-chemistry/gromacs: resurect accidently dropped patch Closes: https://bugs.gentoo.org/950002 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> sci-chemistry/gromacs/files/gromacs-gcc-15.patch | 13 +++++++++++++ 1 file changed, 13 insertions(+)
