make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.5.0/work/Augustus-3.5.0/auxprogs/filterBam' (cd src;make) make[3]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.5.0/work/Augustus-3.5.0/auxprogs/filterBam/src' x86_64-pc-linux-gnu-g++ -Wall -Wextra -Wpedantic -std=c++11 -O3 -O2 -pipe -march=native -fno-diagnostics-color -I./headers -I/usr/include/bamtools -c filterBam.cc In file included from ./headers/filterBam.h:10, from filterBam.cc:28: ./headers/bamaccess.hh:76:13: error: uint32_t does not name a type 76 | virtual uint32_t countEqualSignsInQuerySequence() const = 0; | ^~~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_no_multilib_systemd-20250210-194507 UNMASKED: Requested by sam =media-video/ffmpeg-7* <sys-devel/gcc-15.0.9999:15 Please re-assign to ztrawhcse@ if you cannot reproduced it with regular meson. <dev-build/meson-9999 The attached etc.portage.tar.xz has all details. ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-15 * clang version 18.1.8 llvm-config: 19.1.7 Python 3.12.9 go version go1.23.6 linux/amd64 Available Ruby profiles: [1] ruby32 (with Rubygems) [2] ruby33 (with Rubygems) * Available Rust versions: [1] rust-bin-1.84.1 * HEAD of ::gentoo commit e6d857f299a424890384574f0e3e356d320c5d49 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Tue Feb 11 09:33:38 2025 +0000 2025-02-11 09:33:37 UTC emerge -qpvO =sci-biology/augustus-3.5.0 [ebuild N ] sci-biology/augustus-3.5.0 USE="-doc -test"
Created attachment 918728 [details] emerge-info.txt
Created attachment 918729 [details] emerge-history.txt
Created attachment 918730 [details] environment
Created attachment 918731 [details] etc.clang.tar.xz
Created attachment 918732 [details] etc.portage.tar.xz
The file size of ./files/logs.tar.xz is too big (3.2M) for an upload. For few weeks the link http://tinderbox.zwiebeltoralf.de:31560/23.0_no_multilib_systemd-20250210-194507/var/tmp/tb/issues/20250211-103559-sci-biology_augustus-3.5.0/files/logs.tar.xz is valid.
Created attachment 918733 [details] qlist-info.txt
Created attachment 918734 [details] sci-biology:augustus-3.5.0:20250211-103355.log
Created attachment 918735 [details] temp.tar.xz
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=eb668702f3bd1a2f3b9ff0e7ad4f19edca41fb76 commit eb668702f3bd1a2f3b9ff0e7ad4f19edca41fb76 Author: Alfred Wingate <parona@protonmail.com> AuthorDate: 2025-02-11 13:05:38 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2025-02-13 08:45:32 +0000 sci-biology/augustus: fix gcc15 build Closes: https://bugs.gentoo.org/949617 Signed-off-by: Alfred Wingate <parona@protonmail.com> Closes: https://github.com/gentoo/gentoo/pull/40531 Signed-off-by: Sam James <sam@gentoo.org> sci-biology/augustus/augustus-3.5.0.ebuild | 1 + .../augustus/files/augustus-3.5.0-fix-gcc15.patch | 20 ++++++++++++++++++++ 2 files changed, 21 insertions(+)
