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Bug 947634 - sci-biology/clustalx-2.1-r3: depends on downstream Qt5 patching, fails to build against Qt6
Summary: sci-biology/clustalx-2.1-r3: depends on downstream Qt5 patching, fails to bui...
Status: RESOLVED PKGREMOVED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: EAPI7Removal qt5-removal
  Show dependency tree
 
Reported: 2025-01-06 19:41 UTC by Andreas Sturmlechner
Modified: 2025-04-14 21:15 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Andreas Sturmlechner gentoo-dev 2025-01-06 19:41:22 UTC
With errors such as:

> HistogramWidget.cpp:208:42: error: ‘class QFontMetrics’ has no member named ‘width’
> mainwindow.cpp:164:17: error: ‘class QVBoxLayout’ has no member named ‘setMargin’
> mainwindow.h:58:7: error: using typedef-name ‘using QStringList = class QList<QString>’ after ‘class’

If no one ports this to Qt6 soon, it will be one of the first last-rites candidates.
Comment 1 Larry the Git Cow gentoo-dev 2025-03-01 23:09:49 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b9395100c67e2cff1ad12340d6cce787ae3b62bb

commit b9395100c67e2cff1ad12340d6cce787ae3b62bb
Author:     Andreas Sturmlechner <asturm@gentoo.org>
AuthorDate: 2025-03-01 23:08:45 +0000
Commit:     Andreas Sturmlechner <asturm@gentoo.org>
CommitDate: 2025-03-01 23:08:45 +0000

    profiles: Mask sci-biology/clustalx for removal
    
    Bug: https://bugs.gentoo.org/947634
    Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>

 profiles/package.mask | 6 ++++++
 1 file changed, 6 insertions(+)
Comment 2 Larry the Git Cow gentoo-dev 2025-03-30 19:26:48 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c01d1062a7ba44d16f1d99d7723c0fc02570efd

commit 7c01d1062a7ba44d16f1d99d7723c0fc02570efd
Author:     Andreas Sturmlechner <asturm@gentoo.org>
AuthorDate: 2025-03-30 19:22:51 +0000
Commit:     Andreas Sturmlechner <asturm@gentoo.org>
CommitDate: 2025-03-30 19:22:51 +0000

    profiles: Extend sci-biology/clustalx package.mask for a bit
    
    Bug: https://bugs.gentoo.org/947634
    Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>

 profiles/package.mask | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
Comment 3 Larry the Git Cow gentoo-dev 2025-04-14 21:15:58 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b21882a02b227d9345060b5d209a48f8b6dd7b0f

commit b21882a02b227d9345060b5d209a48f8b6dd7b0f
Author:     Andreas Sturmlechner <asturm@gentoo.org>
AuthorDate: 2025-04-13 19:39:01 +0000
Commit:     Andreas Sturmlechner <asturm@gentoo.org>
CommitDate: 2025-04-14 21:14:55 +0000

    sci-biology/clustalx: treeclean
    
    Closes: https://bugs.gentoo.org/947634 (pkgremoved)
    Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>

 profiles/package.mask                             |   6 -
 sci-biology/clustalx/Manifest                     |   2 -
 sci-biology/clustalx/clustalx-2.1-r3.ebuild       |  55 ----
 sci-biology/clustalx/files/clustalx-2.1-qt5.patch | 295 ----------------------
 sci-biology/clustalx/metadata.xml                 |   8 -
 5 files changed, 366 deletions(-)