too long lines were shrinked: make[1]: Leaving directory '/var/tmp/portage/sci-biology/yass-1.14-r3/work/yass-1.14/src' make[1]: Entering directory '/var/tmp/portage/sci-biology/yass-1.14-r3/work/yass-1.14/src' clang -DPACKAGE_NAME=\"yass\" -DPACKAGE_TARNAME=\"yass\" -DPACKAGE_VERSION=\"1.14\" -DPACKAGE_STRING=\"yass\ 1.14\" -DPACKAGE_BUGREPORT=\"laurent.noe@lifl.fr\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_ make[1]: Leaving directory '/var/tmp/portage/sci-biology/yass-1.14-r3/work/yass-1.14/src' make[1]: Entering directory '/var/tmp/portage/sci-biology/yass-1.14-r3/work/yass-1.14/src' clang -O2 -pipe -march=native -fno-diagnostics-color -DTHREAD_ASSEMBLE_ALIGN -DTHREAD_FORWARD_REVERSE -DTHREAD_QUERY_CHUNK -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -g -o yass align.o assemble.o avl.o display.o global_var.o hash.o ld.lld: error: non-exported symbol 'atexit' in '/usr/lib64/libc_nonshared.a(atexit.oS)' is referenced by DSO '/usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../lib64/libdmalloc.so' clang: error: linker command failed with exit code 1 (use -v to see invocation) make[1]: *** [Makefile:367: yass] Error 1 ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_llvm_systemd-20241220-181511 The attached etc.portage.tar.xz has all details. ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-14 * clang version 19.1.6+libcxx llvm-config: 19.1.6+libcxx Python 3.12.8 go version go1.23.4 linux/amd64 Available Ruby profiles: [1] ruby32 (with Rubygems) * Available Rust versions: [1] rust-bin-1.83.0 * HEAD of ::gentoo commit daa95b0b8949a2ef60d24e7ba11910edc20ae0e2 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Sun Dec 22 03:33:40 2024 +0000 2024-12-22 03:33:39 UTC emerge -qpvO =sci-biology/yass-1.14-r3 [ebuild N ] sci-biology/yass-1.14-r3 USE="dmalloc threads -lowmem"
Created attachment 914668 [details] emerge-info.txt
Created attachment 914669 [details] emerge-history.txt
Created attachment 914670 [details] environment
Created attachment 914671 [details] etc.clang.tar.xz
Created attachment 914672 [details] etc.portage.tar.xz
Created attachment 914673 [details] logs.tar.xz
Created attachment 914674 [details] qlist-info.txt
Created attachment 914675 [details] sci-biology:yass-1.14-r3:20241222-041521.log
Created attachment 914676 [details] temp.tar.xz
Added upstream bug https://github.com/j256/dmalloc/issues/116
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d0977ceabf102fd8b7d570902a5feb516f71016c commit d0977ceabf102fd8b7d570902a5feb516f71016c Author: NHOrus <jy6x2b32pie9@yahoo.com> AuthorDate: 2024-12-30 17:07:08 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2024-12-31 14:22:33 +0000 sci-biology/yass: Remove USE=dmalloc It's janky and causes build failures Bug: https://bugs.gentoo.org/946814 Signed-off-by: NHOrus <jy6x2b32pie9@yahoo.com> Signed-off-by: Sam James <sam@gentoo.org> sci-biology/yass/metadata.xml | 1 - sci-biology/yass/yass-1.14-r3.ebuild | 9 +++------ 2 files changed, 3 insertions(+), 7 deletions(-)
