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Bug 941488 - sci-chemistry/molmol-2k_p2-r9 - [ncurses-6.5] [libtool] [gcc-15] make[4]: No rule to make target ../../lib/libfileio.a, needed by molmol. Stop.
Summary: sci-chemistry/molmol-2k_p2-r9 - [ncurses-6.5] [libtool] [gcc-15] make[4]: No ...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Chemistry-Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-10-13 19:34 UTC by Toralf Förster
Modified: 2024-10-17 13:58 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,20.05 KB, text/plain)
2024-10-13 19:34 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,226.72 KB, text/plain)
2024-10-13 19:34 UTC, Toralf Förster
Details
environment (environment,75.58 KB, text/plain)
2024-10-13 19:34 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.20 KB, application/x-xz)
2024-10-13 19:34 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,21.95 KB, application/x-xz)
2024-10-13 19:34 UTC, Toralf Förster
Details
logs.tar.xz (logs.tar.xz,6.65 KB, application/x-xz)
2024-10-13 19:34 UTC, Toralf Förster
Details
qlist-info.txt.xz (qlist-info.txt.xz,64.67 KB, application/x-xz)
2024-10-13 19:34 UTC, Toralf Förster
Details
sci-chemistry:molmol-2k_p2-r9:20241013-183504.log (sci-chemistry:molmol-2k_p2-r9:20241013-183504.log,108.20 KB, text/plain)
2024-10-13 19:34 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2024-10-13 19:34:35 UTC
sleep 2
make[4]: Leaving directory '/var/tmp/portage/sci-chemistry/molmol-2k_p2-r9/work/src/cmdmisc'
cd main; make default
make[4]: Entering directory '/var/tmp/portage/sci-chemistry/molmol-2k_p2-r9/work/src/main'
x86_64-pc-linux-gnu-gcc -I../../tools/include -I../../sg/include -I../../include  -O2 -pipe -march=native -fno-diagnostics-color -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto -I../../tools/include -I../../sg/include -I../../include   -c -o MolMol.o MolMol.c
x86_64-pc-linux-gnu-gcc -I../../tools/include -I../../sg/include -I../../include  -O2 -pipe -march=native -fno-diagnostics-color -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto -I../../tools/include -I../../sg/include -I../../include   -c -o MolInit.o MolInit.c
make[4]: *** No rule to make target '../../lib/libfileio.a', needed by 'molmol'.  Stop.
make[4]: Leaving directory '/var/tmp/portage/sci-chemistry/molmol-2k_p2-r9/work/src/main'
make[3]: *** [Makefile:15: main] Error 2 shuffle=1341746210

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_desktop_gnome-20241006-183956

  UNMASKED:
  /etc/portage/package.unmask/60gcc:<sys-devel/gcc-15.0.9999:15
    Requested by sam
    Issues involving opaque types / incomplete typedefs should block bug 930805
  /etc/portage/package.unmask/50unstable:>=sys-libs/ncurses-6.5

  Block bug #351559 if this looks like a parallel build issue.
  Possible reproducer: MAKEOPTS='...  shuffle=1341746210'

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle"
gcc-config -l:
 [1] x86_64-pc-linux-gnu-15 *
clang/llvm (if any):
clang version 19.1.1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/19/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/19
19.1.1
Python 3.12.7
Available Ruby profiles:
  [1]   ruby32 (with Rubygems)
  [2]   ruby33 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.81.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.24_p8 [openjdk-bin-11]
2)	Eclipse Temurin JDK 17.0.12_p7 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.4_p7 [openjdk-bin-21]
4)	Eclipse Temurin JDK 8.422_p05 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17 
  [4]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
  [1]   php8.3 *
go version go1.23.1 linux/amd64

  HEAD of ::gentoo
commit ead3b9984f7c8590c1ee7f4695ea84ef3d34d9bf
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Sun Oct 13 17:48:26 2024 +0000

    2024-10-13 17:48:26 UTC

emerge -qpvO =sci-chemistry/molmol-2k_p2-r9
[ebuild  N    ] sci-chemistry/molmol-2k_p2-r9
Comment 1 Toralf Förster gentoo-dev 2024-10-13 19:34:35 UTC
Created attachment 905688 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-10-13 19:34:37 UTC
Created attachment 905689 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2024-10-13 19:34:39 UTC
Created attachment 905690 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2024-10-13 19:34:40 UTC
Created attachment 905691 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-10-13 19:34:41 UTC
Created attachment 905692 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-10-13 19:34:42 UTC
Created attachment 905693 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2024-10-13 19:34:43 UTC
Created attachment 905694 [details]
qlist-info.txt.xz
Comment 8 Toralf Förster gentoo-dev 2024-10-13 19:34:45 UTC
Created attachment 905695 [details]
sci-chemistry:molmol-2k_p2-r9:20241013-183504.log
Comment 9 Pacho Ramos gentoo-dev 2024-10-17 13:54:26 UTC

*** This bug has been marked as a duplicate of bug 880621 ***
Comment 10 Larry the Git Cow gentoo-dev 2024-10-17 13:58:16 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d0bc75131f367e36e87e7561fd489ef939763927

commit d0bc75131f367e36e87e7561fd489ef939763927
Author:     Pacho Ramos <pacho@gentoo.org>
AuthorDate: 2024-10-17 13:55:56 +0000
Commit:     Pacho Ramos <pacho@gentoo.org>
CommitDate: 2024-10-17 13:58:08 +0000

    sci-chemistry/molmol: Really disable parallel build
    
    Enforce the disabling of parallel build, this also allows to drop the ugly
    upstream delays to make it build.
    
    Closes: https://bugs.gentoo.org/880621
    Closes: https://bugs.gentoo.org/941488
    Signed-off-by: Pacho Ramos <pacho@gentoo.org>

 sci-chemistry/molmol/molmol-2k_p2-r9.ebuild | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)