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Bug 938673 - sci-libs/vtk-9.3.0[cuda]: error: namespace "thrust::THRUST_200500_890_NS::detail" has no member class "is_arithmetic"
Summary: sci-libs/vtk-9.3.0[cuda]: error: namespace "thrust::THRUST_200500_890_NS::det...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Paul Zander
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-08-29 09:32 UTC by Miroslav Šulc
Modified: 2024-10-31 22:29 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
vtk-9.3.0-ThrustPatches-is_arithmetic.patch (vtk-9.3.0-ThrustPatches-is_arithmetic.patch,945 bytes, patch)
2024-10-31 22:29 UTC, Chicago
Details | Diff

Note You need to log in before you can comment on or make changes to this bug.
Description Miroslav Šulc gentoo-dev 2024-08-29 09:32:30 UTC
after update to dev-util/nvidia-cuda-toolkit-12.6.0 rebuild of vtk was triggered which ended up with this error:

[1372/10462] /opt/cuda/bin/nvcc -forward-unknown-to-host-compiler -ccbin=/usr/x86_64-pc-linux-gnu/gcc-bin/13 -DVTKMDIY_DEBUG -DVTKMDIY_MPI_AS_LIB -DVTKMDIY_NO_THREADS -Dvtkm_cont_EXPORTS -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/optionparser -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/diy -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/lcl/vtkmlcl -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/loguru -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0_build/ThirdParty/vtkm/vtkvtkm/vtk-m/include -isystem /var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/diy/vtkmdiy/include -isystem /var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0_build/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/diy/vtkmdiy/include/vtkmdiy/mpi -O2 -g -DNDEBUG -std=c++14 "--generate-code=arch=compute_89,code=[compute_89,sm_89]" -Xcompiler=-fPIC -Xcompiler=-fvisibility=hidden -Xcompiler=-Wall,-Wcast-align,-Wpointer-arith,-Wformat,-Wformat-security,-Wshadow,-fno-common,-Wunused,-Wno-unknown-pragmas,-Wno-unused-local-typedefs,-Wno-unused-function,-Wchar-subscripts,-Wfloat-conversion,-Wodr -Xcudafe=--display_error_number -Xcompiler=-ffunction-sections --expt-relaxed-constexpr -Xcompiler=-fopenmp -MD -MT ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeFiles/vtkm_cont.dir/CellLocatorUniformBins.cxx.o -MF ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeFiles/vtkm_cont.dir/CellLocatorUniformBins.cxx.o.d -x cu -c /var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CellLocatorUniformBins.cxx -o ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeFiles/vtkm_cont.dir/CellLocatorUniformBins.cxx.o
FAILED: ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeFiles/vtkm_cont.dir/CellLocatorUniformBins.cxx.o 
/opt/cuda/bin/nvcc -forward-unknown-to-host-compiler -ccbin=/usr/x86_64-pc-linux-gnu/gcc-bin/13 -DVTKMDIY_DEBUG -DVTKMDIY_MPI_AS_LIB -DVTKMDIY_NO_THREADS -Dvtkm_cont_EXPORTS -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/optionparser -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/diy -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/lcl/vtkmlcl -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/loguru -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m -I/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0_build/ThirdParty/vtkm/vtkvtkm/vtk-m/include -isystem /var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/diy/vtkmdiy/include -isystem /var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0_build/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/diy/vtkmdiy/include/vtkmdiy/mpi -O2 -g -DNDEBUG -std=c++14 "--generate-code=arch=compute_89,code=[compute_89,sm_89]" -Xcompiler=-fPIC -Xcompiler=-fvisibility=hidden -Xcompiler=-Wall,-Wcast-align,-Wpointer-arith,-Wformat,-Wformat-security,-Wshadow,-fno-common,-Wunused,-Wno-unknown-pragmas,-Wno-unused-local-typedefs,-Wno-unused-function,-Wchar-subscripts,-Wfloat-conversion,-Wodr -Xcudafe=--display_error_number -Xcompiler=-ffunction-sections --expt-relaxed-constexpr -Xcompiler=-fopenmp -MD -MT ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeFiles/vtkm_cont.dir/CellLocatorUniformBins.cxx.o -MF ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeFiles/vtkm_cont.dir/CellLocatorUniformBins.cxx.o.d -x cu -c /var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CellLocatorUniformBins.cxx -o ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeFiles/vtkm_cont.dir/CellLocatorUniformBins.cxx.o
nvcc warning : incompatible redefinition for option 'compiler-bindir', the last value of this option was used
/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/exec/cuda/internal/WrappedOperators.h(198): error: namespace "thrust::THRUST_200500_890_NS::detail" has no member class "is_arithmetic"
    : public thrust::detail::is_arithmetic<T>
                             ^

/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/exec/cuda/internal/WrappedOperators.h(198): error: class or struct definition is missing
    : public thrust::detail::is_arithmetic<T>
                                          ^

2 errors detected in the compilation of "/var/tmp/portage/sci-libs/vtk-9.3.0/work/VTK-9.3.0/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CellLocatorUniformBins.cxx".



# emerge --info '=sci-libs/vtk-9.3.0::gentoo'
Portage 3.0.65 (python 3.13.0-candidate-1, default/linux/amd64/23.0/split-usr/hardened, gcc-13, glibc-2.40, 6.9.12-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-6.9.12-gentoo-x86_64-13th_Gen_Intel-R-_Core-TM-_i9-13980HX-with-glibc2.40
KiB Mem:    65451764 total,  31137140 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Thu, 29 Aug 2024 07:34:11 +0000
Head commit of repository gentoo: e8f574bf6c178adc9181fe9a445635fc664d38c3

Timestamp of repository flavour: Mon, 26 Aug 2024 13:19:00 +0000
Head commit of repository flavour: ee2f51681c083a2f7f1520d13bf51b7d7ac2a2a3

Timestamp of repository fordfrog: Mon, 19 Aug 2024 06:22:13 +0000
Head commit of repository fordfrog: 45e71ee1e8406b57a4bc0dc34f6241be0d6a25b6

Timestamp of repository gentoo-zh: Wed, 28 Aug 2024 14:03:50 +0000
Head commit of repository gentoo-zh: 9b38de0ab22a6c44d85c36a060ed958c2886f374

Head commit of repository librewolf: ad8bd23b0fad08885620d6cc08a92d7ac0e68e61

Timestamp of repository pf4public: Wed, 28 Aug 2024 16:03:51 +0000
Head commit of repository pf4public: ec1c7726211d88aa819f24be613b07387ccbcf0b

sh bash 5.2_p32-r1
ld GNU ld (Gentoo 2.42 p6) 2.42.0
ccache version 4.10.2 [disabled]
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.2_p32-r1::gentoo
dev-build/autoconf:        2.72-r1::gentoo
dev-build/automake:        1.17-r1::gentoo
dev-build/cmake:           3.30.2::gentoo
dev-build/libtool:         2.4.7-r4::gentoo
dev-build/make:            4.4.1-r1::gentoo
dev-build/meson:           1.5.1::gentoo
dev-java/java-config:      2.3.4::gentoo
dev-lang/perl:             5.40.0::gentoo
dev-lang/python:           3.10.14_p1-r1::gentoo, 3.11.9_p2::gentoo, 3.12.5_p1::gentoo, 3.13.0_rc1_p3::gentoo
dev-lang/rust-bin:         1.80.1::gentoo
dev-util/ccache:           4.10.2::gentoo
sys-apps/baselayout:       2.15::gentoo
sys-apps/openrc:           0.54.2::gentoo
sys-apps/sandbox:          2.39::gentoo
sys-devel/binutils:        2.42-r2::gentoo, 2.43-r1::gentoo
sys-devel/binutils-config: 5.5.2::gentoo
sys-devel/clang:           17.0.6::gentoo, 18.1.8::gentoo, 19.1.0_rc3::gentoo, 20.0.0_pre20240822::gentoo
sys-devel/gcc:             13.3.1_p20240614::gentoo, 14.2.1_p20240817::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/lld:             19.1.0_rc1::gentoo, 20.0.0_pre20240822::gentoo
sys-devel/llvm:            17.0.6-r2::gentoo, 18.1.8-r4::gentoo, 19.1.0_rc3::gentoo, 20.0.0_pre20240822::gentoo
sys-kernel/linux-headers:  6.10::gentoo (virtual/os-headers)
sys-libs/glibc:            2.40::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo.git
    priority: -1000
    volatile: False

flavour
    location: /var/db/repos/flavour
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/flavour.git
    masters: gentoo
    volatile: False

fordfrog
    location: /var/db/repos/fordfrog
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/fordfrog.git
    masters: gentoo
    volatile: False

gentoo-zh
    location: /var/db/repos/gentoo-zh
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo-zh.git
    masters: gentoo
    volatile: False

librewolf
    location: /var/db/repos/librewolf
    sync-type: git
    sync-uri: https://codeberg.org/librewolf/gentoo.git
    masters: gentoo
    volatile: False

pf4public
    location: /var/db/repos/pf4public
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/pf4public.git
    masters: gentoo
    volatile: False

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA android AnyDesk-TOS NVIDIA-SDK PUEL-11"
AR="llvm-ar"
CBUILD="x86_64-pc-linux-gnu"
CC="clang"
CFLAGS="-march=alderlake -mpopcnt -mlzcnt -mno-cldemote -mno-kl -mno-pconfig -mno-sgx -mno-widekl -mshstk -O2 -pipe -frecord-gcc-switches"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.9/conf"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CPP="clang-cpp"
CXX="clang++"
CXXFLAGS="-march=alderlake -mpopcnt -mlzcnt -mno-cldemote -mno-kl -mno-pconfig -mno-sgx -mno-widekl -mshstk -O2 -pipe -frecord-gcc-switches"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--misspell-suggestions n"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-march=alderlake -mpopcnt -mlzcnt -mno-cldemote -mno-kl -mno-pconfig -mno-sgx -mno-widekl -mshstk -O2 -pipe -frecord-gcc-switches"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=alderlake -mpopcnt -mlzcnt -mno-cldemote -mno-kl -mno-pconfig -mno-sgx -mno-widekl -mshstk -O2 -pipe -frecord-gcc-switches"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="cs_CZ.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs"
LEX="flex"
LINGUAS="cs cs_CZ en en_US en_UK"
MAKEOPTS="-j33"
NM="llvm-nm"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RANLIB="llvm-ranlib"
SHELL="/bin/bash"
USE="X a52 aac aacplus acl alsa amd64 aubio bluetooth btrfs bzip2 cdda cddb cdr cet color-management colord crypt cuda cups dbus dia dssi dvb dvd elogind exif ffmpeg flac gdbm gegl gif gles gles1 gles2 gles3 gphoto2 gsm gtk gtk3 hardened hddtemp http2 iconv icu id3tag ipv6 jack jack-dbus jacksession javafx jpeg keyring kwallet ladspa lastfm latex lcms libass libnotify libproxy libsamplerate libtirpc lilypond lm-sensors lto lv2 mad modplug mp3 mpeg mpi mtp multilib musepack ncurses nls ntfs nvme ocr ogg opencl openexr opengl openmp optix opus osc pam pcre pdf pic pie pipewire png policykit pulseaudio qt5 qt6 raw readline rubberband samba scanner screencast seccomp sf2 sndfile soundio speex spell split-usr ssl ssp startup-notification svg svg2 taglib test-rust theora tiff timidity tk tray truetype udev unicode usb vaapi vamp vdpau verify-sig visio vorbis vpx vst vulkan wavpack wayland webp widevine wmf x264 x265 xattr xfce xinerama xmp xtpax xv xvid zlib" ABI_X86="32 64" ADA_TARGET="gcc_12" APACHE2_MODULES="alias auth_basic authn_core authn_file authz_core authz_host authz_user cgi cgid deflate dir expires filter headers http2 include info log_config mime mime_magic negotiation proxy proxy_ajp rewrite setenvif socache_shmcb status unixd vhost_alias" APACHE2_MPMS="event" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 ssse3 vpclmulqdq" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" GUILE_SINGLE_TARGET="3-0" GUILE_TARGETS="3-0" INPUT_DEVICES="evdev libinput wacom" KERNEL="linux" L10N="cs cs-CZ en en-US en-UK" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LLVM_TARGETS="NVPTX" LUA_SINGLE_TARGET="luajit lua5-4" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PERL_FEATURES="ithreads" PHP_TARGETS="php8-2" POSTGRES_TARGETS="postgres16" PYTHON_SINGLE_TARGET="python3_12" PYTHON_TARGETS="python3_11 python3_12 python3_13" RUBY_TARGETS="ruby31 ruby32 ruby33" SANE_BACKENDS="genesys" VIDEO_CARDS="fbdev intel nvidia vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, ARFLAGS, AS, ASFLAGS, CCLD, CONFIG_SHELL, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS

=================================================================
                        Package Settings
=================================================================

sci-libs/vtk-9.3.0::gentoo was built with the following:
USE="boost cuda ffmpeg freetype logging mpi openmp python qt6 rendering threads tk views vtkm -all-modules (-debug) -doc -examples -gdal -gles2-only -imaging -java -las -mysql -odbc -opencascade -openvdb -pdal -postgres -qt5 -sdl -tbb -test -web" ABI_X86="(64)" PYTHON_SINGLE_TARGET="python3_12 -python3_10 -python3_11" VIDEO_CARDS="nvidia"
CFLAGS="-march=alderlake -mabm -mno-cldemote -mno-kl -mno-pconfig -mno-sgx -mno-widekl -mshstk --param=l1-cache-line-size=64 --param=l1-cache-size=48 --param=l2-cache-size=36864 -O2 -pipe -frecord-gcc-switches"
CXXFLAGS="-march=alderlake -mabm -mno-cldemote -mno-kl -mno-pconfig -mno-sgx -mno-widekl -mshstk --param=l1-cache-line-size=64 --param=l1-cache-size=48 --param=l2-cache-size=36864 -O2 -pipe -frecord-gcc-switches"


# emerge -pqv '=sci-libs/vtk-9.3.0::gentoo'
[ebuild   R   ] sci-libs/vtk-9.3.0  USE="boost cuda ffmpeg freetype logging mpi openmp python qt6 rendering threads tk views vtkm -all-modules (-debug) -doc -examples -gdal -gles2-only -imaging -java -las -mysql -odbc -opencascade -openvdb -pdal -postgres -qt5 -sdl -tbb -test -web" PYTHON_SINGLE_TARGET="python3_12 -python3_10 -python3_11" VIDEO_CARDS="nvidia"
Comment 1 Miroslav Šulc gentoo-dev 2024-09-03 17:20:01 UTC
changing the failing code to std::is_arithmetic made me finish the compilation. whether the fix is appropriate or not i can't judge...
Comment 2 Chicago 2024-10-31 22:29:47 UTC
Created attachment 907497 [details, diff]
vtk-9.3.0-ThrustPatches-is_arithmetic.patch

Fix compile error using unsupported thrust::detail::is_arithmetic
https://gitlab.kitware.com/vtk/vtk-m/-/commit/744a60ee563f1125c54bca07ead909a532d4b43a