* openmpi-5.0.3.tar.bz2 BLAKE2B SHA512 size ;-) ... [ ok ] * checking ebuild checksums ;-) ... [ ok ] * checking auxfile checksums ;-) ... [ ok ] * checking miscfile checksums ;-) ... [ ok ] * Using following Fortran compiler: * F77: x86_64-pc-linux-gnu-gfortran * FC: x86_64-pc-linux-gnu-gfortran * * OpenMPI has an overwhelming count of configuration options. * Don't forget the EXTRA_ECONF environment variable can let you * specify configure options if you find them necessary. * >>> Unpacking source... >>> Unpacking openmpi-5.0.3.tar.bz2 to /var/tmp/portage/sys-cluster/openmpi-5.0.3/work >>> Source unpacked in /var/tmp/portage/sys-cluster/openmpi-5.0.3/work >>> Preparing source in /var/tmp/portage/sys-cluster/openmpi-5.0.3/work/openmpi-5.0.3 ... * Running elibtoolize in: openmpi-5.0.3/ * Applying ppc64le/2.4.4 patch ... * Running elibtoolize in: openmpi-5.0.3/3rd-party/openpmix/ * Applying ppc64le/2.4.4 patch ... * Running elibtoolize in: openmpi-5.0.3/3rd-party/openpmix/config/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... * Applying specs/2.4.6 patch ... * Applying fsanitize/2.4.6 patch ... * Applying fuse-ld/2.4.6 patch ... * Applying static-flags/2.4.6 patch ... * Applying werror/2.4.6 patch ... * Applying cxx-pthread/2.4.6 patch ... * Applying color-record/2.4.6-alt patch ... * Applying sed-quote/2.4.6 patch ... * Applying openmp/2.4.6 patch ... * Applying verbose-pic/2.4.7 patch ... * Running elibtoolize in: openmpi-5.0.3/3rd-party/prrte/ * Applying ppc64le/2.4.4 patch ... * Running elibtoolize in: openmpi-5.0.3/3rd-party/prrte/config/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... * Applying specs/2.4.6 patch ... * Applying fsanitize/2.4.6 patch ... * Applying fuse-ld/2.4.6 patch ... * Applying static-flags/2.4.6 patch ... * Applying werror/2.4.6 patch ... * Applying cxx-pthread/2.4.6 patch ... * Applying color-record/2.4.6-alt patch ... * Applying sed-quote/2.4.6 patch ... * Applying openmp/2.4.6 patch ... * Applying verbose-pic/2.4.7 patch ... * Running elibtoolize in: openmpi-5.0.3/3rd-party/romio341/ * Applying ppc64le/2.4.4 patch ... * Running elibtoolize in: openmpi-5.0.3/3rd-party/romio341/confdb/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... * Applying specs/2.4.6 patch ... * Applying fsanitize/2.4.6 patch ... * Applying fuse-ld/2.4.6 patch ... * Applying static-flags/2.4.6 patch ... * Applying werror/2.4.6 patch ... * Applying cxx-pthread/2.4.6 patch ... * Applying color-record/2.4.6-alt patch ... * Applying sed-quote/2.4.6 patch ... * Applying openmp/2.4.6 patch ... * Applying verbose-pic/2.4.7 patch ... * Running elibtoolize in: openmpi-5.0.3/3rd-party/romio341/mpl/ * Applying ppc64le/2.4.4 patch ... * Running elibtoolize in: openmpi-5.0.3/3rd-party/romio341/mpl/confdb/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... * Applying specs/2.4.6 patch ... * Applying fsanitize/2.4.6 patch ... * Applying fuse-ld/2.4.6 patch ... * Applying static-flags/2.4.6 patch ... * Applying werror/2.4.6 patch ... * Applying cxx-pthread/2.4.6 patch ... * Applying color-record/2.4.6-alt patch ... * Applying sed-quote/2.4.6 patch ... * Applying openmp/2.4.6 patch ... * Applying verbose-pic/2.4.7 patch ... * Running elibtoolize in: openmpi-5.0.3/config/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... * Applying specs/2.4.6 patch ... * Applying fsanitize/2.4.6 patch ... * Applying fuse-ld/2.4.6 patch ... * Applying static-flags/2.4.6 patch ... * Applying werror/2.4.6 patch ... * Applying cxx-pthread/2.4.6 patch ... * Applying color-record/2.4.6-alt patch ... * Applying sed-quote/2.4.6 patch ... * Applying openmp/2.4.6 patch ... * Applying verbose-pic/2.4.7 patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sys-cluster/openmpi-5.0.3/work/openmpi-5.0.3 ... * econf: updating openmpi-5.0.3/3rd-party/prrte/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating openmpi-5.0.3/3rd-party/prrte/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating openmpi-5.0.3/3rd-party/openpmix/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating openmpi-5.0.3/3rd-party/openpmix/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating openmpi-5.0.3/3rd-party/romio341/confdb/config.guess with /usr/share/gnuconfig/config.guess * econf: updating openmpi-5.0.3/3rd-party/romio341/confdb/config.sub with /usr/share/gnuconfig/config.sub * econf: updating openmpi-5.0.3/3rd-party/romio341/mpl/confdb/config.guess with /usr/share/gnuconfig/config.guess * econf: updating openmpi-5.0.3/3rd-party/romio341/mpl/confdb/config.sub with /usr/share/gnuconfig/config.sub * econf: updating openmpi-5.0.3/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating openmpi-5.0.3/config/config.sub with /usr/share/gnuconfig/config.sub ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --disable-static --docdir=/usr/share/doc/openmpi-5.0.3 --htmldir=/usr/share/doc/openmpi-5.0.3/html --with-sysroot=/ --libdir=/usr/lib64 --disable-mpi-java --enable-mpi-fortran=all --enable-orterun-prefix-by-default --enable-pretty-print-stacktrace --sysconfdir=/etc/openmpi --with-hwloc=external --with-libevent=external --disable-heterogeneous --enable-mpi-cxx --enable-ipv6 --enable-peruse --disable-io-romio --without-cma --without-cuda --with-valgrind --without-knem --without-tm --without-slurm ============================================================================ == Configuring Open MPI ============================================================================ *** Prerequisites checking for a sed that does not truncate output... /usr/bin/sed checking for perl... perl *** Startup tests checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/lib/portage/python3.12/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '250' is supported by ustar format... yes checking whether GID '250' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports nested variables... (cached) yes checking directory of build tree... /var/tmp/portage/sys-cluster/openmpi-5.0.3/work/openmpi-5.0.3 checking directory of source tree... . checking directory of prefix... /usr *** Checking versions checking for repo version... v5.0.3 checking Open MPI version... 5.0.3 checking Open MPI release date... Apr 08, 2024 checking Open MPI repository version... v5.0.3 checking MPI Standard version... 3.1 checking for repo version... v5.0.3 checking Open SHMEM version... 5.0.3 checking Open SHMEM release date... Apr 08, 2024 checking Open SHMEM repository version... v5.0.3 checking for repo version... v5.0.3 checking Open Portable Access Layer version... 5.0.3 checking Open Portable Access Layer release date... Apr 08, 2024 checking Open Portable Access Layer repository version... v5.0.3 checking for bootstrap Autoconf version... 2.71 checking for bootstrap Automake version... 1.16 checking for bootstrap Libtool version... 2.4.6 *** Initialization, setup configure: builddir: /var/tmp/portage/sys-cluster/openmpi-5.0.3/work/openmpi-5.0.3 configure: srcdir: /var/tmp/portage/sys-cluster/openmpi-5.0.3/work/openmpi-5.0.3 configure: WARNING: An MPI C++ bindings-related command line option configure: WARNING: was given to "configure". configure: WARNING: configure: WARNING: This command line option will be removed in a future configure: WARNING: version of Open MPI; you should discontinue using it. configure: WARNING: You have been warned! configure: WARNING: configure: WARNING: The MPI C++ bindings were deprecated in the MPI-2.2 configure: WARNING: standard in 2009, and removed from the MPI-3.0 configure: WARNING: standard in 2012. The MPI C++ bindings were then configure: WARNING: removed from Open MPI v5.0.0 in 2022. configure: WARNING: configure: WARNING: If you need support for the MPI C++ bindings, you configure: WARNING: will need to use an older version of Open MPI. configure: error: Build cannot continue. !!! Please attach the following file when seeking support: !!! /var/tmp/portage/sys-cluster/openmpi-5.0.3/work/openmpi-5.0.3/config.log * ERROR: sys-cluster/openmpi-5.0.3::gentoo failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 136: Called src_configure * environment, line 1920: Called econf '--disable-mpi-java' '--enable-mpi-fortran=all' '--enable-orterun-prefix-by-default' '--enable-pretty-print-stacktrace' '--sysconfdir=/etc/openmpi' '--with-hwloc=external' '--with-libevent=external' '--disable-heterogeneous' '--enable-mpi-cxx' '--enable-ipv6' '--enable-peruse' '--disable-io-romio' '--without-cma' '--without-cuda' '--with-valgrind' '--without-knem' '--without-tm' '--without-slurm' * phase-helpers.sh, line 719: Called __helpers_die 'econf failed' * isolated-functions.sh, line 112: Called die * The specific snippet of code: * die "$@" * * If you need support, post the output of `emerge --info '=sys-cluster/openmpi-5.0.3::gentoo'`, * the complete build log and the output of `emerge -pqv '=sys-cluster/openmpi-5.0.3::gentoo'`. * The complete build log is located at '/var/tmp/portage/sys-cluster/openmpi-5.0.3/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/openmpi-5.0.3/temp/environment'. * Working directory: '/var/tmp/portage/sys-cluster/openmpi-5.0.3/work/openmpi-5.0.3' * S: '/var/tmp/portage/sys-cluster/openmpi-5.0.3/work/openmpi-5.0.3' Reproducible: Always USE=-cxx makes it compile. Note that prior version sys-cluster/openmpi-4.x had no problems with cxx, it became problematic only with the advent of 5.x.
Another observation: virtual/mpi tries to pull in mpich conflicting with new openmpi. It also has cxx USE flag, but the conflict now may rather be threads...
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3f705371ca6c8dfe69107584905f4b4f5de9cd51 commit 3f705371ca6c8dfe69107584905f4b4f5de9cd51 Author: Eli Schwartz <eschwartz@gentoo.org> AuthorDate: 2024-07-16 20:23:13 +0000 Commit: Eli Schwartz <eschwartz@gentoo.org> CommitDate: 2024-07-17 05:43:04 +0000 sys-cluster/openmpi: remove USE=cxx support in 5.x It has been removed upstream, with a note that it was deprecated in the MPI-2.2 (2009) standard and removed in the MPI-3.0 (2012) standard and as such won't be shipped by openmpi. Attempting to configure with it anyway does produce a fatal configure error. Closes: https://bugs.gentoo.org/936168 Signed-off-by: Eli Schwartz <eschwartz@gentoo.org> sys-cluster/openmpi/openmpi-5.0.3.ebuild | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-)
